View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_low_3 (Length: 808)
Name: NF18272_low_3
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_low_3 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 639; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 13 - 745
Target Start/End: Complemental strand, 4021964 - 4021230
Alignment:
| Q |
13 |
aacctgtgtgagactccaatacaacttaaataatttggtatatcatctgccaaattaaagagaacagggaactgatcgcataaaggttgatccccaagcc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4021964 |
aacctgtgtgagactccaatacaacttaaataatttggtatatcatctgccaaattaaagagaacagggaactgatcgcataaaggttgattcccaagcc |
4021865 |
T |
|
| Q |
113 |
atagatctctccaaaacaatgtgttttcacttttcaccatttccgactactcacataacttaatttgtaaaccagtttggttcgacttcacatgcctttc |
212 |
Q |
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| T |
4021864 |
atagatctctccaaaacaatgtgttttcacttttcaccgtttccaactactcacttaacttaatttgtaaaccagtttggttcgacttcacatgcctttc |
4021765 |
T |
|
| Q |
213 |
caatagaacataaatatcgccaccataacgagtctatccttcccgactacacggtatctggacggagcaattttcctgaaactggactgtacctatactt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4021764 |
caatagaacataaatatcgccaccataacgagtctatccttcccgactacacggtatctggatggagcaattttcctgaaactggactgtacctatactt |
4021665 |
T |
|
| Q |
313 |
tattaacccgaaccaaatagtaccattttccgcaatgcacctccataaccattttcttcgtaacgttaaatgaaataagtacaagttttttacttcgagt |
412 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4021664 |
tattaacctgaaccaaatagtaccattttccgcaatgcacctccataaccattttcttcgtaactttaaatgaaataagtacaagttttttacttcgagt |
4021565 |
T |
|
| Q |
413 |
cctccttcttttgaccgacacaccttctccgaactcacccaaataatcttatttccttccaaaccctctccccaattcat--tgtaaatctttatttaag |
510 |
Q |
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| T |
4021564 |
cctccttcttttgaccgacacaccttctcccaactcacccaattaatcttatttccttccaaaccctctcctcaattcattgtgtaaatctttatttaag |
4021465 |
T |
|
| Q |
511 |
tttaggaggttaacattatatatgatcttacatgggagaatgccacacctaatttaaatctgttttcatnnnnnnnttccattattacgttggttcctct |
610 |
Q |
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| T |
4021464 |
tttaggaggttaacattatatatgatcttacatgggagtatgccacacctaattttaatctgttttcataaaaaaattccattattacgttggttcctcc |
4021365 |
T |
|
| Q |
611 |
caaaagtaatcttaaccattttccttccaaaattttccattccctccaaaactctcaactgcaaaaacccaaaatgaaacgggaaaattttttgcgctca |
710 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
4021364 |
caaaagtaatcttaaccattttccttccaaaaatttccattccctccaaaactctcaactgcaaaaacccaaaatgaaacggtaaaaatttttgcgctca |
4021265 |
T |
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| Q |
711 |
attatggaaaccctaatgactctaacaaccaccag |
745 |
Q |
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| T |
4021264 |
attatggaaaccctaatgactctaacaaccaccag |
4021230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 753 - 795
Target Start/End: Complemental strand, 4021188 - 4021146
Alignment:
| Q |
753 |
tctttgattcgctatatcgtttttggaggtaaagcttctttct |
795 |
Q |
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| T |
4021188 |
tctttgattcgctatatcgtttttggaggtaaagcttctttct |
4021146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 5190 - 5113
Alignment:
| Q |
181 |
aaaccagtttggttcgacttcacatgcctttccaatagaacataaatatcgccaccataacgagtctatccttcccga |
258 |
Q |
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| T |
5190 |
aaaccagtttggttccacttcacacacctttcctattgaacataaatcacgccaccataacgagtctaaccttcccga |
5113 |
T |
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