View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_low_32 (Length: 239)
Name: NF18272_low_32
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_low_32 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 36225568 - 36225346
Alignment:
| Q |
17 |
aaaagatagatggtattgctgctgaaattgcagaagaagtgtttgagaagacaaaacaatcgctttaaccatcatggtaaaagagtatacaagttacact |
116 |
Q |
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| T |
36225568 |
aaaagatagatggtattgctgctgaaattgcagaagaagtgtttgagaagacaaaacaatcgctttaaccatcatggtaaaagagtatacaagttacact |
36225469 |
T |
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| Q |
117 |
tgttcaggaaaatccagtttcctatcagaaagaacaatttaagttgttttaattaaaactacttcttgggtgttattatagtagaacaagtgaaatatta |
216 |
Q |
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| T |
36225468 |
tgttcaggaaaatccagtttactatcagaaagaactatttaagttgttttaattaaaactacttcttgggtgttattatagtagaacaagtgaaatatta |
36225369 |
T |
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| Q |
217 |
gcagcataacaaatatgtgtgcc |
239 |
Q |
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| T |
36225368 |
gcagcataacaaatatgtgtgcc |
36225346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 239
Target Start/End: Original strand, 36235432 - 36235596
Alignment:
| Q |
81 |
ttaaccatcatggtaaaagagtatacaagttacacttgttcaggaaaatccagtttcctatcagaaagaacaatttaagttgtttta----attaaaact |
176 |
Q |
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| T |
36235432 |
ttaaccatcatggtaaaagagtacacaagttacacttgttcagg-aaattcaatttcttatcagaaagaactatttaatttgttctagtctattaaatct |
36235530 |
T |
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| Q |
177 |
acttcttgggtg---ttattatagtagaacaagtgaaatattagcagcataacaaatatgtgtgcc |
239 |
Q |
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| T |
36235531 |
tctgcttgggtgtaataataatagttgaactcgtgaaatattagcagcataacaattatgtgtgcc |
36235596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 36235344 - 36235398
Alignment:
| Q |
17 |
aaaagatagatggtattgctgctgaaattgcagaagaagtgtttgagaagacaaa |
71 |
Q |
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| T |
36235344 |
aaaagatagatggtattgctgctgaaattgcagaagaagtttttgagaagacaaa |
36235398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 36252138 - 36252203
Alignment:
| Q |
81 |
ttaaccatcatggtaaaagagtatacaagttacacttgttcaggaaaatccagtttcctatcagaa |
146 |
Q |
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| T |
36252138 |
ttaaccatcttagtaaaagagaatacaagttacaattgttcaggaaaatgcaatttcctatcagaa |
36252203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 36252056 - 36252110
Alignment:
| Q |
17 |
aaaagatagatggtattgctgctgaaattgcagaagaagtgtttgagaagacaaa |
71 |
Q |
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| T |
36252056 |
aaaagatagatggtaatgctgctgcaatttcagaacaagtatttgagaaaacaaa |
36252110 |
T |
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