View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18272_low_35 (Length: 225)

Name: NF18272_low_35
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18272_low_35
NF18272_low_35
[»] chr7 (3 HSPs)
chr7 (70-158)||(47027683-47027775)
chr7 (1-70)||(47027586-47027655)
chr7 (179-210)||(47027799-47027830)
[»] chr1 (1 HSPs)
chr1 (1-59)||(36582466-36582524)


Alignment Details
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 70 - 158
Target Start/End: Original strand, 47027683 - 47027775
Alignment:
Q  70 taaaagattgattcacctttcctta----ttcttgaaataagataagaaatcatacaaattaaagtcacttattaattcctcaaaacaagata 158  Q
    |||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47027683 taaaagattgattcacctttccttaattattcttgaaataagataagaaatcatacaaattaaactcacttattaattcctcaaaacaagata 47027775  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 47027586 - 47027655
Alignment:
Q  1 gattttaaaagggtggatgctcttgttcaccagctgaaaggcagcagctccaggtaatatattaatcttt 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47027586 gattttaaaagggtggatgctcttgttcaccagctgaaaggcagcagctccaggtaatatattaatcttt 47027655  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 210
Target Start/End: Original strand, 47027799 - 47027830
Alignment:
Q  179 ttttgataagtcgttgagttattggaaaatac 210  Q
    ||||||||||||||||||||||||||||||||    
T  47027799 ttttgataagtcgttgagttattggaaaatac 47027830  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 36582524 - 36582466
Alignment:
Q  1 gattttaaaagggtggatgctcttgttcaccagctgaaaggcagcagctccaggtaata 59  Q
    |||||||| ||  ||||||||| |||||||||  ||||||| |||||||||||||||||    
T  36582524 gattttaagagaatggatgctcatgttcaccaattgaaaggtagcagctccaggtaata 36582466  T

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