View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_low_4 (Length: 673)
Name: NF18272_low_4
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 12 - 655
Target Start/End: Original strand, 18168797 - 18169440
Alignment:
| Q |
12 |
agcacagacacaaacattggacacgacaatgatttctctttagagtgcatggccattagtggcaattcaagtgaaatagcactagaatttttgatgtctc |
111 |
Q |
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| T |
18168797 |
agcacagacacagacattggacacgacaatgatttctcttctgagtgcatggccattagtggcaattcaagtgaaatagcactagaatttttgaagtctc |
18168896 |
T |
|
| Q |
112 |
ttatatcttctaatgaatgtttctcttcctttctctctgagctctcagaagatgtcaatgaactttccaatgaacacaaagaagttccattgtcatgttt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
18168897 |
ttatatcttctaatgaatgtttctcttcctttctctctgagctctcagaagatgtcaaagaactttccaatgaacacaaagaagttccattttcatgttt |
18168996 |
T |
|
| Q |
212 |
cctctcctcgtagtttaaacttaaccctcttgattctgttagatctgagattggagaacttggacaagcattgttgatcatagtaaccaactgagagagt |
311 |
Q |
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| T |
18168997 |
cctctcctcgtagtttaaacttaaccctcttgattctgttagatctgagattggagaacttggacaagcattgttgatcatagtaaccaattgagagagt |
18169096 |
T |
|
| Q |
312 |
tcatcttctgtgagttttatcccaattggtgaagaattgtatccagagagggcttcctgcgccttcgttagtaccgattgtaaatattttccttgagctt |
411 |
Q |
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| T |
18169097 |
tcatcttttgtgagttttatcccaattggtgaagaattgtatccagagagggcttcctgcgccttcattagtaccgattgtaaatattttccttgagcgt |
18169196 |
T |
|
| Q |
412 |
cgattcgaagctgcaaatgtttctgcacctgaaatcaacatcctaatcgattaacacgtacttatgcaacatttagtgcatatttggatacacaatgtat |
511 |
Q |
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| T |
18169197 |
caattcgaagctgcaaatgtttctgcacctgaaatcaacatcctaatcgattaacacgtacttatgcaacatttagtgcatatttggatacacaatgtat |
18169296 |
T |
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| Q |
512 |
ttgacgaaatcacggtggtacactgtgattctaccaaactcactgtcaatccaaaaatgtacttagaattatgattgaagcaaattttaatcatgatatc |
611 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |
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| T |
18169297 |
ttgacgaaatcacggtggtacactgtcattctaccaaacacactgtcaatccaaaaatgtacttagaattatgattgaatcaagttttattcatgatatc |
18169396 |
T |
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| Q |
612 |
acattatatatgttacctcaatttgttcattaagtttcctttct |
655 |
Q |
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| T |
18169397 |
acattatatatgttacctcaatttgttcattaagtttcctttct |
18169440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 363 - 448
Target Start/End: Original strand, 31748532 - 31748617
Alignment:
| Q |
363 |
gcttcctgcgccttcgttagtaccgattgtaaatattttccttgagcttcgattcgaagctgcaaatgtttctgcacctgaaatca |
448 |
Q |
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| T |
31748532 |
gcttcctgtgccttcattagtactgattgtaagtactttccttgagcttcaattctaaactgtaaatgtttctgcacctgaaatca |
31748617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 31748370 - 31748452
Alignment:
| Q |
207 |
tgtttcctctcctcgtagtttaaacttaaccctcttgattctgttagatctgagattggagaacttggacaagcattgttgat |
289 |
Q |
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| T |
31748370 |
tgtttcctctcaccgaagtttaaactaaaacctcttgtttctgtcagttctgaaagtggagaactaggacatgcattgttgat |
31748452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 530 - 566
Target Start/End: Complemental strand, 31502192 - 31502156
Alignment:
| Q |
530 |
tacactgtgattctaccaaactcactgtcaatccaaa |
566 |
Q |
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| T |
31502192 |
tacaccgtgattctgccaaactcactgtcaatccaaa |
31502156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 518 - 566
Target Start/End: Complemental strand, 32508668 - 32508620
Alignment:
| Q |
518 |
aaatcacggtggtacactgtgattctaccaaactcactgtcaatccaaa |
566 |
Q |
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||||||| |||| ||||||||||||||||| |||||| || |||||||| |
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| T |
32508668 |
aaatcacagtggcacactgtgattctaccatactcaccgtaaatccaaa |
32508620 |
T |
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