View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_low_5 (Length: 619)
Name: NF18272_low_5
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 9452686 - 9453031
Alignment:
| Q |
1 |
tttacagtcagtttaactattcatgtctctagaatcagactattatataattataattgtgtaatgaaatcagggaaataaaactttatcaagtatcaag |
100 |
Q |
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| T |
9452686 |
tttacagtcagtttaactattaatgtctctagaatcagactattatataattataattgtgtaatgaaatcagggaaataaaactttgtcaagtatcagg |
9452785 |
T |
|
| Q |
101 |
ttaacaattccttgctctattatgatagtacataaattagatttggttagataaataaaactttgtcaaaa-aacaatttgagatggcaaagatatttta |
199 |
Q |
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| T |
9452786 |
ttaacaattccttgctctattatgatagtacataaattagatttggttagaaaaataaaactttgtcaaaaaaacaatttgagatggcaaagatatttta |
9452885 |
T |
|
| Q |
200 |
taagaaaaatgttagataccgcgagaggatttttcacgaaagcttccagaatgagatggcaacacaccatccattggatcttatatttaatgaattcacc |
299 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
9452886 |
taagaaaaatgctagataccgcgagaggatttttcacgaaagcttctagaatgagatggcaacacaccatccattagatcttatatttaatgaatttacc |
9452985 |
T |
|
| Q |
300 |
gcttcatcttaaaagagcaacaatagggttcataaacaagtaaata |
345 |
Q |
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| T |
9452986 |
gcttcatcttaaaagagcaacaatagggttcataaacaagtaaata |
9453031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 21546787 - 21546588
Alignment:
| Q |
1 |
tttacagtcagtttaactattcatgtctctagaatcagactattatataattataattgtgtaatgaaatcagggaaataaaactttatcaagtatcaag |
100 |
Q |
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| T |
21546787 |
tttacaatcagtttaactattcatgtctctagaatcaaactattatataattataactgtgtaatgaaatcagggaaataaaactgt--caagtaacagg |
21546690 |
T |
|
| Q |
101 |
ttaacaattccttgctctattatgatagtacataaattagatttggttagataaataaaactttgtcaaaaaacaatttgagatggcaaagatattttat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
21546689 |
ttaacaattccttgctctattatgatagtacataaattagatttggttagataaataaaactttgtcaaaaaacaatttgatatgacaaagatattttat |
21546590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 458 - 607
Target Start/End: Complemental strand, 21546596 - 21546446
Alignment:
| Q |
458 |
attttataatttctaatgaatatttgacagtaaagcattgcacagcaaacccaccttcaatcgctcttatcagctaccaaaaaa-tatctcccattaatt |
556 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||||||| |||||||| |||||||| ||||||||||| ||| |
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| T |
21546596 |
attttataatttctaatgaatatttgacagtaaagcgttgcacatcaaatccacctttaatcgctcctatcagctgccaaaaaaatatctcccattcatt |
21546497 |
T |
|
| Q |
557 |
tcccatacattaatttggaagttacacatgattttatgtttatggcattct |
607 |
Q |
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| T |
21546496 |
tcccatacattaatttggaagttacacatgattttatgtttatggcattct |
21546446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 203 - 395
Target Start/End: Original strand, 46424083 - 46424267
Alignment:
| Q |
203 |
gaaaaatgttagataccgcgagaggatttttcacgaaagcttccagaatgagatggcaacacaccatccattggatcttatatttaatgaattcaccgct |
302 |
Q |
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|||||||| ||||||| || ||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46424083 |
gaaaaatgctagatacagcaagagggtttttcacgaaagc-------atgagttgacaacacaccatccattggatcttatatttaatgaattcatcgct |
46424175 |
T |
|
| Q |
303 |
tcatcttaaaagagcaacaatagggttcataaacaagtaaataataataacacaaagcacgcaagtgttttccgcccagtaattgcttttaat |
395 |
Q |
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|||||||||||||||||||| | |||| ||||||||||||||| |||| |||||||||| || || |||||| ||||||||| |||||||| |
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| T |
46424176 |
tcatcttaaaagagcaacaacatggtttttaaacaagtaaataacaatagcacaaagcacacacatgatttccggccagtaatt-cttttaat |
46424267 |
T |
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