View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_low_7 (Length: 562)
Name: NF18272_low_7
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 36 - 549
Target Start/End: Complemental strand, 7239130 - 7238617
Alignment:
| Q |
36 |
tcatcaaattaatgaacatcactgtatttttcgattctcatggacattatagaaacaatcttgtccctcatttaatttataggtaacttgctccttttca |
135 |
Q |
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| T |
7239130 |
tcatcaaattaatgaacatcactgtatttttcgattctcatggacattatagaatcaatcttgtccctcatttaatttataggtaacttgctccttttca |
7239031 |
T |
|
| Q |
136 |
tttacaaaacaaccaatgtcggactcatgaattttaatttcagctaaacaatcaaaacatatgttcctaagtagattctaattagttttaaatgggattt |
235 |
Q |
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| T |
7239030 |
tttacaaaacaaccaatgtgggactcatgaattttaatttcagctaaacaatcaaaacatatgttcctaagtagattctaattagttttaaatgggattt |
7238931 |
T |
|
| Q |
236 |
ttatttctgaaatttgatgaaaattgtccaacctatttcagccatttcatttccatctaatttcaaccatcccttatgcaattgtagcagcagttcatac |
335 |
Q |
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| T |
7238930 |
ttatttctgaaatttgatggaaattgtccaacctatttcagccatttcatctccatctaatttcaaccatcccttatgcaattatagtagcagttcatac |
7238831 |
T |
|
| Q |
336 |
catacaaatttcaaagacgaaattatgagcaaatttgtaagtttaaagcaatttggcactgtcagtgacactccacaccatttctttattcgtgacagta |
435 |
Q |
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| T |
7238830 |
catataaatttcaaagacgaaattatgagcaaatttgtaagtttaaagcaatttggcactgtcagtgacactccacaccatttctttattcgtgacagta |
7238731 |
T |
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| Q |
436 |
tattctcgaagaaggtaacattatgaacaaagcatggttttgtttcagttctaatcgtaattattcgggtttacaatgaacctatttcctgaaagattgg |
535 |
Q |
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| T |
7238730 |
tattgtcgaagaaggtaacatcatgaacaaagcatggttttgtttcagttctaatcgtaattattcgggtttacaatgaacctatttcctgaaagattgg |
7238631 |
T |
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| Q |
536 |
aagattttggagaa |
549 |
Q |
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| T |
7238630 |
aagattttggagaa |
7238617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 120 - 253
Target Start/End: Complemental strand, 7240731 - 7240599
Alignment:
| Q |
120 |
aacttgctccttttcatttacaaaacaaccaatgtcggactcatgaattttaatttcagctaaacaatcaaaacatatgttcctaagtagattctaatta |
219 |
Q |
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|||||| |||||||||| ||| ||||||| |||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| || |
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| T |
7240731 |
aacttgttccttttcatatacgaaacaactgatgtgggactcatgatttttaatttcagctcaacaatcaaaacatatgctcctaagtagattctaaata |
7240632 |
T |
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| Q |
220 |
gttttaaatgggatttttatttctgaaatttgat |
253 |
Q |
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| T |
7240631 |
gttttaaat-gaatttttatttctgaaatttgat |
7240599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 7240572 - 7240513
Alignment:
| Q |
262 |
tccaacctatttcagccatttcatttccatctaatttcaaccatcccttatgcaattgta |
321 |
Q |
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| T |
7240572 |
tccaatctatttcagccatttcatttctatctcatttcaatcatcccttatgcaattgta |
7240513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 425
Target Start/End: Original strand, 41425791 - 41425855
Alignment:
| Q |
361 |
tgagcaaatttgtaagtttaaagcaatttggcactgtcagtgacactccacaccatttctttatt |
425 |
Q |
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| T |
41425791 |
tgagaaaacttggaagttttaagcaatttgacactatcagtgacacttcagaccattactttatt |
41425855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 427
Target Start/End: Complemental strand, 5839891 - 5839798
Alignment:
| Q |
334 |
accatacaaatttcaaagacgaaattatgagcaaatttgtaagtttaaagcaatttggcactgtcagtgacactccacaccatttctttattcg |
427 |
Q |
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| T |
5839891 |
accatgcaaatttcaaagatgaaattctgaggaaatttggaagttttaagaaattcgatattgccagtgacactaaacaccattactttgttcg |
5839798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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