View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18272_low_9 (Length: 537)
Name: NF18272_low_9
Description: NF18272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18272_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 20 - 525
Target Start/End: Complemental strand, 34173407 - 34172902
Alignment:
| Q |
20 |
agctataagattagggtcatgtttggataaacatattatttgcagtttacagaataaacacttatcatgactaactacttgtcaacattgcaatgaaact |
119 |
Q |
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| T |
34173407 |
agctataagattagggtcatgtttggataaacatattatttgcagtttacagaataaacacttatcatgactaactacttgtcaacattgcaatgaaact |
34173308 |
T |
|
| Q |
120 |
cgagaacattgtatcttttaggtcttatttgtgtgatgattttgtttatatgtgagacctgtgtgcttttgaagtgcattgatttgttttatgcttcttt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34173307 |
cgagaacattgtatcttttaggtcttatttgtgtgatgattttgtttatatgtgagacctgtgtgcttttgaagtgcattgatttgttttatgcttcttt |
34173208 |
T |
|
| Q |
220 |
ttacagtttaagcctgatgagattactggtatcatgaaagatttcgacgaaccaggacatcttgcacctactggcatgcaccttggggaaatcaagtaca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34173207 |
ttacagtttaagcctgatgagattactggtatcatgaaagatttcgacgaaccaggacatcttgcacctactggcatgcaccttggggaaatcaagtaca |
34173108 |
T |
|
| Q |
320 |
tggttattcaaggagagcctggagctgtcattcgtgggaagaaggtaactttttatactcatagggtgggaatgaatcgcccaacatatcaaatatttct |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34173107 |
tggttattcaaggagagcctggagctgtcattcgtgggaagaaggtaactttttatactcatagggtgggaatgaatcgcccaacatatcaaatgtttct |
34173008 |
T |
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| Q |
420 |
gcaactttttaccaaatgagttatgcatttggaagaatttatttggatgattcttattagtacagcatctttctcatacaaacgacatgaaaatgacaaa |
519 |
Q |
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| T |
34173007 |
gcaactttttaccaaatgagttatgcatttggaagaatttatttggatgattcttattagtacagcatctttctcatacaaacgacatgaaaatgacaaa |
34172908 |
T |
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| Q |
520 |
tatatt |
525 |
Q |
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|||||| |
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| T |
34172907 |
tatatt |
34172902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 218 - 367
Target Start/End: Original strand, 43051678 - 43051827
Alignment:
| Q |
218 |
ttttacagtttaagcctgatgagattactggtatcatgaaagatttcgacgaaccaggacatcttgcacctactggcatgcaccttggggaaatcaagta |
317 |
Q |
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|||| ||| |||||||| | |||| |||| ||| ||||||||||| |||||||| || |||||||| ||||| ||| ||||||||| | | |||| || |
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| T |
43051678 |
tttttcagattaagcctcaagagaacactgatattatgaaagattttgacgaacctggtcatcttgctcctacgggcttgcaccttgcaggagtcaaata |
43051777 |
T |
|
| Q |
318 |
catggttattcaaggagagcctggagctgtcattcgtgggaagaaggtaa |
367 |
Q |
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| T |
43051778 |
catggtcatccaaggagagtctggtgctgtcatccgtgggaagaaggtaa |
43051827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 43055532 - 43055579
Alignment:
| Q |
319 |
atggttattcaaggagagcctggagctgtcattcgtgggaagaaggta |
366 |
Q |
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| T |
43055532 |
atggtgattcaaggtgaacctggagctgtcattcgagggaagaaggta |
43055579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 33128628 - 33128678
Alignment:
| Q |
39 |
tgtttggataaacatattatttgcagtttacagaataaacacttatcatga |
89 |
Q |
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| T |
33128628 |
tgtttggataaacagcttatttgcagcttacagcacaaacacttatcatga |
33128678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 34290120 - 34290170
Alignment:
| Q |
39 |
tgtttggataaacatattatttgcagtttacagaataaacacttatcatga |
89 |
Q |
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| T |
34290120 |
tgtttggataaacatcttatttgcaatttacagcataaacgcttattatga |
34290170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 16451021 - 16451069
Alignment:
| Q |
41 |
tttggataaacatattatttgcagtttacagaataaacacttatcatga |
89 |
Q |
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| T |
16451021 |
tttggataaacatcttatttgcagcttacagcataagcactgatcatga |
16451069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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