View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18273_high_13 (Length: 321)
Name: NF18273_high_13
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18273_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 104 - 300
Target Start/End: Complemental strand, 6508216 - 6507999
Alignment:
| Q |
104 |
tatacattttggtgaaaaggccgtgtaaaattatactaaaaagagtttgtatttgtgttgtttg---------------------tactcttgattggtt |
182 |
Q |
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| T |
6508216 |
tatacattttggtgaaaaggccgtgtaaaattatactaaaaagagtttgtatttgtgttgtttggctaatctctagcaatccttgtactcttgattggtt |
6508117 |
T |
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| Q |
183 |
tgatatttaatatatttttgcatttnnnnnnnngacattaacataatgtccttttccttcactcaatgatcaagtcagtgtctttaaaagacttgccact |
282 |
Q |
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| T |
6508116 |
tgatatttaatatatttttgcctttaaaaaaaagacattaacataatgtctttttccttctctcaatgatcaagttagtgtctttaaaagacttgccact |
6508017 |
T |
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| Q |
283 |
acttccattctattctat |
300 |
Q |
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|||||||||||||||||| |
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| T |
6508016 |
acttccattctattctat |
6507999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 6508277 - 6508232
Alignment:
| Q |
17 |
acattgtcatctaattttaacaattgagatgcataatgaattaagt |
62 |
Q |
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| T |
6508277 |
acattgtcatctaattttaacaattgagatgcataaggaattaagt |
6508232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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