View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18273_high_15 (Length: 315)
Name: NF18273_high_15
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18273_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 38 - 307
Target Start/End: Original strand, 6248716 - 6248981
Alignment:
| Q |
38 |
gaaacagccaatattacctgtatttgtttgttacggttnnnnnnncccagttctcttagttataaatacccacctatagatacaaacaacatagcactca |
137 |
Q |
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| T |
6248716 |
gaaacagccaatattacctgtatttgtttgttacggttaaaaaaacccagttctcttagttataaatacccacctata----caaacaacatagcactca |
6248811 |
T |
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| Q |
138 |
gacttatatttgctcgnnnnnnnaacactatcgacctcaaacctacgacatcaaagacaaagtgatttcccaccaacaaattaagatgaccggatcaact |
237 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |
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| T |
6248812 |
gacttatatttgctcgtttttttaacactatcgacctcaaacctacgacatcaaagacaaagtgattttccaccaacaaactaagatgaccggaacaact |
6248911 |
T |
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| Q |
238 |
aggcctagccaccatcaaattttcgacatcgaatgggagataatttcacaatcagatagtgatgatgatg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6248912 |
aggcctagccaccatcaaattttcgacatcgaatgggagataatttcacaatcagatagtgatgatgatg |
6248981 |
T |
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