View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18273_high_24 (Length: 254)
Name: NF18273_high_24
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18273_high_24 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 34344325 - 34344082
Alignment:
| Q |
7 |
gcagagagtacagaccatttgtttactttttcactcctttattacttaannnnnnnnnnnnnattgaaacaagtacccaccacacacgttatctttcctt |
106 |
Q |
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| T |
34344325 |
gcagagagtacagaccatttgtttactttttcactattttattgcttaatttttatttttttattgaaacaaatatccacaacacacgttatctttcctt |
34344226 |
T |
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| Q |
107 |
cannnnnnnn-ggattcattgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaatgtccaaagaacaca |
205 |
Q |
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| T |
34344225 |
catttttttttggattcattgatttggtggaccatacaaatacacacattagaacattttattttatcacttgttatctctccaaagtccaaagaacaca |
34344126 |
T |
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| Q |
206 |
agtccaaaactcataaagcttaccattcttccttcttccttctt |
249 |
Q |
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| T |
34344125 |
agtccaaaactcataaagcttaccattcttccttcttccttctt |
34344082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 190
Target Start/End: Original strand, 18913128 - 18913195
Alignment:
| Q |
123 |
attgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaa |
190 |
Q |
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| T |
18913128 |
attgagttggtggaccttacaaatacacatatcacaaccttatcttttaccacttgttatctctccaa |
18913195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 3018022 - 3017805
Alignment:
| Q |
26 |
tgtttactttttcactcctttattacttaannnnnnnnnnnnnattgaaacaagtacccaccacacacgttatctttccttcannnnnnnng-gattcat |
124 |
Q |
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| T |
3018022 |
tgtttactttttcactcctttattacttaatttttatttttttattgaaacaaatacccaccacacacattatctttccttcattttttttttgattcat |
3017923 |
T |
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| Q |
125 |
tgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaatgtccaaagaacacaagtccaaaactcataaagc |
224 |
Q |
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| T |
3017922 |
tgatttggtggaccatacaaatacacacattacaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagc |
3017823 |
T |
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| Q |
225 |
ttaccattcttccttctt |
242 |
Q |
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| T |
3017822 |
ttaccattcttccttctt |
3017805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 122 - 249
Target Start/End: Original strand, 37278612 - 37278739
Alignment:
| Q |
122 |
cattgatttggtggaccatacaaatacacacatttcaacattttattttatcacttgttatctctccaatgtccaaagaacacaagtccaaaactcataa |
221 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37278612 |
cattgatttggtggatcatacaaatacacacattacaacattttcttttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataa |
37278711 |
T |
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| Q |
222 |
agcttaccattcttccttcttccttctt |
249 |
Q |
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| T |
37278712 |
agcttgccattcttcctttttccttctt |
37278739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 37278504 - 37278551
Alignment:
| Q |
7 |
gcagagagtacagaccatttgtttactttttcactcctttattactta |
54 |
Q |
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| T |
37278504 |
gcagagagtgcaaaccatttgtttactttttcactcttttattgctta |
37278551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 147 - 254
Target Start/End: Original strand, 46420229 - 46420336
Alignment:
| Q |
147 |
acacacatttcaacattttattttatcacttgttatctctccaatgtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt |
246 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46420229 |
acacacattacaacattttattttatcacttgttatctctccaaagtccaaagaacacaagtccaaaactcataaagcttaccattcttccttcttcctt |
46420328 |
T |
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| Q |
247 |
cttctaac |
254 |
Q |
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||| |||| |
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| T |
46420329 |
cttataac |
46420336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 46420152 - 46420196
Alignment:
| Q |
11 |
agagtacagaccatttgtttactttttcactcctttattacttaa |
55 |
Q |
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| T |
46420152 |
agagtacataccatttgtttactttttcactcctttattgcttaa |
46420196 |
T |
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