View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18273_high_5 (Length: 513)
Name: NF18273_high_5
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18273_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 466; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 17 - 502
Target Start/End: Original strand, 39174024 - 39174509
Alignment:
| Q |
17 |
aaaaagaagctcacatctccaacaataacagacgtcctcttttggaagtaaaatttaatggtcttcctcatccaagacagtaacttgattgattccaatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39174024 |
aaaaagaagctcacatctccaacaataacagacgtcctcttttggaagtaaaatttaatggtcttcctcatccaagacagtaacttgattgattccaatt |
39174123 |
T |
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| Q |
117 |
taacaaaaacaagagaaaatgaatatcaatctctgaaaatttaactcattttcattttgcttattgttgtcgaagaaacaattgggtcaccgtctcatct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39174124 |
taacaaaaacaagagaaaatgaatatcaatctctgaaaatttaactcatattcattttgcttattgttgtcgaagaaacaattgggtcaccgtctcatct |
39174223 |
T |
|
| Q |
217 |
ataagaacgaggaaacccacgagcttctacctctgagaggcgtcatcaatcatctttattgtcgattttaattggaaaggacccatgagtccatgaccat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
39174224 |
ataagaacgaggaaacccacgagcttctacctctgagaggcatcatcaatcatctttattgtcgattttaattggaaaggacccatgagtccatcaccat |
39174323 |
T |
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| Q |
317 |
actgtatttgtttgttaaaacaaaataaacaaatgtaacctctcgtcaatcaattttacctcattctcaatccctttccgagggtcacagtttcaaggaa |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39174324 |
actgtatttgtttgttaaaacaaaataaacaaatgtaacctctcgtcaatcaattttacctcattctcaatccctttccaagggtcacagtttcaaggaa |
39174423 |
T |
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| Q |
417 |
taccatttccttccaatcgctgtaaactctctctcattttacattactctgtcttctccctcttttacatatcttacactcttcat |
502 |
Q |
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| T |
39174424 |
taccatttccttccaatcgctgtaaactctctctcattttacatcactctgtcttctccctcttttacatatcttacactcttcat |
39174509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 39170401 - 39170794
Alignment:
| Q |
17 |
aaaaagaagctcacatctccaacaataacagacgtcctcttttggaagtaaaatttaatggtcttcctcatccaagacagtaacttgattgattccaatt |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| || |
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| T |
39170401 |
aaaaagaagctcacatctccaacaagaacagacgtcctcttttggaagtaaaatttaacggtcttcctcatccaagacagtaacttgatcgattccagtt |
39170500 |
T |
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| Q |
117 |
taacaaaaacaagagaaaatgaatatcaatctctgaaaatttaactcattttcattttgcttattgttgtcgaagaaacaattgggtcaccgtctcatct |
216 |
Q |
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| T |
39170501 |
taacaaaaacaggagaaaatgaatatcaatctctgaaaatttaactcatattcgtttttcttattgttgtcgaagaaacaattgggtctccgtctcatct |
39170600 |
T |
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| Q |
217 |
ataagaacgaggaaacccacgagcttctacctctgagaggcgtcatcaatcatctttattgtcgattttaattggaaaggacccatgagtccatgaccat |
316 |
Q |
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| T |
39170601 |
ataagaacgaggaaacccacg------tacctctgagaggtgtcatcaatcatctttattgtcgattttaattggaaaggacccatgagtccattaccat |
39170694 |
T |
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| Q |
317 |
actgtatttgtttgttaaaacaaaataaacaaatgtaacctctcgtcaatcaattttacctcattctcaatccctttccgagggtcacagtttcaaggaa |
416 |
Q |
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| T |
39170695 |
actgtatttgtttgttaaaacaaaataaacaaatgtaacccctcgtcaatcaattctacctcattctcaatcccttcccgagggtcacattttcaaggaa |
39170794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 39172650 - 39172587
Alignment:
| Q |
298 |
cccatgagtccatgaccatactgtatttgtttgttaaaacaaaataaacaaatgtaacctctcg |
361 |
Q |
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| T |
39172650 |
cccatgagtccatgaccataccatatttgattgttaagacagaataaataaacgtaacctctcg |
39172587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 502
Target Start/End: Complemental strand, 39176366 - 39176307
Alignment:
| Q |
443 |
ctctctctcattttacattactctgtcttctccctcttttacatatcttacactcttcat |
502 |
Q |
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| T |
39176366 |
ctctctctcattctactttactcttgcttctccctcttttacatttcttgcactcttcat |
39176307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 413 - 502
Target Start/End: Complemental strand, 39172530 - 39172441
Alignment:
| Q |
413 |
ggaataccatttccttccaatcgctgtaaactctctctcattttacattactctgtcttctccctcttttacatatcttacactcttcat |
502 |
Q |
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| T |
39172530 |
ggaacaccatttccttcccattgctgtaagatctctctcattctactttagtctgtcttctttctattttccatttcttgcactcttcat |
39172441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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