View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18273_low_1 (Length: 749)
Name: NF18273_low_1
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18273_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 605; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 1 - 739
Target Start/End: Complemental strand, 11689788 - 11689051
Alignment:
| Q |
1 |
cctcggtatattctacttattcatgtcatggttaaaagaacattggtgcttactattttcaggtcctacctcatttgggccaatagttgaaatggccatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11689788 |
cctcggtatattctacttattcatgtcatggttaaaagaacattggtgcttactattttcaggtcctacctcatttgggccaatagttgaaatggccatg |
11689689 |
T |
|
| Q |
101 |
acaattgttgagcagagtgggggtcagtaccatgttttggtgataatagcagatggccaggtattctttcaactcgatttcctttacgacattaatttta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11689688 |
acaattgttgagcagagtgggggtcagtaccatgttttggtgataatagcagatggccaggtattctttcaactcaatttcctttacgacattaatttta |
11689589 |
T |
|
| Q |
201 |
tttgcatgtgtactcttcaacggctaaacagtttctagtaggtttaaccatacataatggttaaagacattggttgatttatgtgttcgattcaatcaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11689588 |
tttgcatgtgtactcttcaacggctaaacagtttctagtaggtttaaccatacataatggttaaagacattggttgatttatgtgttcggttcaatcaat |
11689489 |
T |
|
| Q |
301 |
gtgttcatgatggctccatttttaccgagtagttattataaacatatctcttgtggtttggccgtgctgcaatttcatagcttatcaca-gtgccttaaa |
399 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | |||| || |
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| T |
11689488 |
gtgttcatgatggatccatttttaccgagtagttattataaacatatcttttgtggtttggccgtgctgcaatttcatagcttttcacatttaccttgaa |
11689389 |
T |
|
| Q |
400 |
aaaccgtctgtctttcgtatggagttgctattattttctaccatgaagtgtaaacattatactcacccgatatcaacaacggtcgatgcaggtaacaaga |
499 |
Q |
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|||||| |||||||||||||||||||||| ||| || || ||| ||||||||||||||||||||| ||| ||| |||| |||||||| ||||||||||| |
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| T |
11689388 |
aaaccg--tgtctttcgtatggagttgctagtatgttttatcattaagtgtaaacattatactcactcgacatctacaatggtcgatgtaggtaacaaga |
11689291 |
T |
|
| Q |
500 |
agtgttgacactgaatatggaaagctaagtccacaggaacagaagactatggacgccattgtccgggctaggtgactctgatgtagtttttgcttcagaa |
599 |
Q |
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|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11689290 |
agtgttgacactgagtatggaaaactaagtccacaggaacagaagactatggatgccattgtccgggctaggtgactctgatgtagtttttgcttcagaa |
11689191 |
T |
|
| Q |
600 |
tatatattttttgaaatatcatatcttatatgttttccttataacagtaagcttcctctttcaatcatattggttggtgttggagacggaccatgggaca |
699 |
Q |
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| ||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
11689190 |
tctatcttttttgaaacatcatatcttatatgttttatttataacagtaagcttcctctttcaattatattggttggtgttggagatggaccatgggaca |
11689091 |
T |
|
| Q |
700 |
tgatgaaagaatttgacgataacattccatctcgtgcctt |
739 |
Q |
| |
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| T |
11689090 |
tgatgaaagaatttgacgataatattccatctcgtgcctt |
11689051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 652 - 706
Target Start/End: Original strand, 30955111 - 30955165
Alignment:
| Q |
652 |
ttcctctttcaatcatattggttggtgttggagacggaccatgggacatgatgaa |
706 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |
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|
| T |
30955111 |
ttcctctttcaatcatattggttggtgttggagatggaccttgggacatggtgaa |
30955165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 643 - 706
Target Start/End: Original strand, 30958940 - 30959003
Alignment:
| Q |
643 |
acagtaagcttcctctttcaatcatattggttggtgttggagacggaccatgggacatgatgaa |
706 |
Q |
| |
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||||||| ||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||| |
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| T |
30958940 |
acagtaaatttcctctatcaatcatattggttggtgttggagatggaccttgggacaagatgaa |
30959003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 8e-26; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 59 - 167
Target Start/End: Original strand, 7473512 - 7473620
Alignment:
| Q |
59 |
tcaggtcctacctcatttgggccaatagttgaaatggccatgacaattgttgagcagagtgggggtcagtaccatgttttggtgataatagcagatggcc |
158 |
Q |
| |
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||||| ||||| ||||||| || || ||||||| ||||||||||||||||||||||||||| || || |||||||||||||||||||| || ||||||| |
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| T |
7473512 |
tcaggccctacatcatttgcacccattgttgaaacggccatgacaattgttgagcagagtggaggccaataccatgttttggtgataattgctgatggcc |
7473611 |
T |
|
| Q |
159 |
aggtattct |
167 |
Q |
| |
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||||||||| |
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| T |
7473612 |
aggtattct |
7473620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 486 - 562
Target Start/End: Original strand, 7473963 - 7474039
Alignment:
| Q |
486 |
tgcaggtaacaagaagtgttgacactgaatatggaaagctaagtccacaggaacagaagactatggacgccattgtc |
562 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| ||| ||||||||||| ||||||||| |||| ||||||||| |
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| T |
7473963 |
tgcaggtaacaagaagtattgacactgaacatggaaggctcagtccacaggagcagaagactgtggatgccattgtc |
7474039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 643 - 715
Target Start/End: Original strand, 7474122 - 7474194
Alignment:
| Q |
643 |
acagtaagcttcctctttcaatcatattggttggtgttggagacggaccatgggacatgatgaaagaatttga |
715 |
Q |
| |
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||||||| |||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| || ||||| |
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| T |
7474122 |
acagtaaatttcctctttcgatcatattggttggtgttggagatggaccttgggacatgatgaaggagtttga |
7474194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 660 - 727
Target Start/End: Complemental strand, 34392570 - 34392503
Alignment:
| Q |
660 |
tcaatcatattggttggtgttggagacggaccatgggacatgatgaaagaatttgacgataacattcc |
727 |
Q |
| |
|
|||||| |||| || || |||||||| || |||||||||||||||||| | ||||||||||||||||| |
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|
| T |
34392570 |
tcaatcgtattagtcggagttggagatgggccatgggacatgatgaaacagtttgacgataacattcc |
34392503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 653 - 725
Target Start/End: Original strand, 44131152 - 44131224
Alignment:
| Q |
653 |
tcctctttcaatcatattggttggtgttggagacggaccatgggacatgatgaaagaatttgacgataacatt |
725 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||| |||||||||||| ||||||| | ||||| ||||||||| |
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|
| T |
44131152 |
tcctctctcaattattttggttggagttggagatggaccatgggacgagatgaaacactttgatgataacatt |
44131224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 669 - 739
Target Start/End: Complemental strand, 37318373 - 37318303
Alignment:
| Q |
669 |
ttggttggtgttggagacggaccatgggacatgatgaaagaatttgacgataacattccatctcgtgcctt |
739 |
Q |
| |
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|||||||| |||||||| ||||| ||||| ||||||| |||||||||||||| |||||| |||| ||||| |
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| T |
37318373 |
ttggttggagttggagatggaccgtgggatatgatgagggaatttgacgataatattccagctcgagcctt |
37318303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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