View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18273_low_10 (Length: 401)
Name: NF18273_low_10
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18273_low_10 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 10 - 401
Target Start/End: Original strand, 38170524 - 38170915
Alignment:
| Q |
10 |
acaacagtgctgatgggaggtgaagctcatgtgccaccttgggagcccatgaaagtatgagagtgtagattaagcaagtgaatggatgattttcttgttt |
109 |
Q |
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| T |
38170524 |
acaacagtgttgatgggaggtgaagctcatgtgccaccttgggagcccatgaaagtatgagagtgtagattaagcaagtgaatggatgattttcttgttt |
38170623 |
T |
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| Q |
110 |
ggtggagagaatgatatttgtgagaaattctgagccgcggcgcgtatactcagacatgtaggagacgatgtcttcgtcgccaaaggatttttgaccgtcg |
209 |
Q |
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| T |
38170624 |
ggaggagagaatgatatttgtgagaaattctgagccgcgacgcgtaaactcagacatgtaggagacgatgtcttcgtcgccaaaggatttttgaccgtcg |
38170723 |
T |
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| Q |
210 |
tcatagccgtcagagaaggtggcgaaggagaggcccgggatggttggtttgttgataaggcgattgtataagtggatagtggtagcaaaagtgacttttg |
309 |
Q |
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| T |
38170724 |
tcatagccgtcagagaaggtggcgaaggagaggcccgggatggttggtttgttgataaggcgactgtataagtggatagtggtagcaaaagtgacttttg |
38170823 |
T |
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| Q |
310 |
cgcccaaagaaatgggacgctcggcgaattggagggcagggtttatgtgaccttgtagtgggtatgttatgatgaggaagtggtggttttgc |
401 |
Q |
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| T |
38170824 |
cgcccaaagaaatgagacgcttggtgaattggagggcagggtttatgtgaccttgtagtgggtatgttatgatgaggaagtggtggttttgc |
38170915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 38185015 - 38185398
Alignment:
| Q |
18 |
gctgatgggaggtgaagctcatgtgccaccttgggagcccatgaaagtatgagagtgtagattaagcaagtgaatggatgattttcttgtttggtggaga |
117 |
Q |
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| T |
38185015 |
gctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggaga |
38185114 |
T |
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| Q |
118 |
gaatgatatttgtgagaaattctgagccgcggcgcgtatactcagacatgtaggagacgatgtcttcgtcgccaaaggatttttgaccgtcgtcatagcc |
217 |
Q |
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| T |
38185115 |
gtatgatatttgttagaaattctgagcagtggcacttaagctcggacctgtaggcgatgaagtcttcgttgctttcgaaatttttaccgtcgtcgtagcc |
38185214 |
T |
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| Q |
218 |
gtcagagaaggtggcgaaggagaggcccgggatggttggtttgttgataaggcgattgtataagtggatagtggtagcaaaagtgacttttgcgcccaaa |
317 |
Q |
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| T |
38185215 |
atcagagaaggtggcgaaggagaggcctgggatggttggtttgttgataaggccagtgtgtaagtagatagttgtagcaaaagtgacttgtgcgccgaaa |
38185314 |
T |
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| Q |
318 |
gaaatgggacgctcggcgaattggagggcagggtttatgtgaccttgtagtgggtatgttatgatgaggaagtggtggttttgc |
401 |
Q |
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| T |
38185315 |
gaaatgagacgcttggcgaattggagtgcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgc |
38185398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 38180346 - 38180729
Alignment:
| Q |
18 |
gctgatgggaggtgaagctcatgtgccaccttgggagcccatgaaagtatgagagtgtagattaagcaagtgaatggatgattttcttgtttggtggaga |
117 |
Q |
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| T |
38180346 |
gctgatgggaggtgaagctcacgtgccacctttgcgacccaaggaatgatgataccgtaggctaagcaagtgaatggacgaccttcctgtttgccggaga |
38180445 |
T |
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| Q |
118 |
gaatgatatttgtgagaaattctgagccgcggcgcgtatactcagacatgtaggagacgatgtcttcgtcgccaaaggatttttgaccgtcgtcatagcc |
217 |
Q |
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| T |
38180446 |
gtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaagtcttcgttgctttcgaattttgggccatcgtcgtggcc |
38180545 |
T |
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| Q |
218 |
gtcagagaaggtggcgaaggagaggcccgggatggttggtttgttgataaggcgattgtataagtggatagtggtagcaaaagtgacttttgcgcccaaa |
317 |
Q |
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||||||||||||||||||||| ||||||| |||||||| ||||||| |||||||| ||| ||||| ||||||||||||||||||||||| |||||||||| |
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| T |
38180546 |
gtcagagaaggtggcgaaggaaaggcccgagatggttgatttgttggtaaggcgagtgtgtaagtagatagtggtagcaaaagtgacttgtgcgcccaaa |
38180645 |
T |
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| Q |
318 |
gaaatgggacgctcggcgaattggagggcagggtttatgtgaccttgtagtgggtatgttatgatgaggaagtggtggttttgc |
401 |
Q |
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| T |
38180646 |
gaaatgagacgtttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgatgatgaggaagtggtggttttgc |
38180729 |
T |
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