View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18273_low_12 (Length: 376)

Name: NF18273_low_12
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18273_low_12
NF18273_low_12
[»] chr2 (7 HSPs)
chr2 (194-376)||(6508504-6508686)
chr2 (49-192)||(6508298-6508431)
chr2 (121-192)||(44949238-44949309)
chr2 (118-186)||(42088484-42088552)
chr2 (133-186)||(9582992-9583044)
chr2 (133-173)||(13266458-13266498)
chr2 (82-184)||(40141979-40142081)
[»] chr4 (6 HSPs)
chr4 (93-187)||(39292295-39292389)
chr4 (96-199)||(37175750-37175853)
chr4 (121-192)||(24943575-24943646)
chr4 (121-187)||(50620627-50620693)
chr4 (96-180)||(26009714-26009798)
chr4 (118-162)||(44369018-44369062)
[»] scaffold1137 (1 HSPs)
scaffold1137 (108-192)||(828-912)
[»] chr3 (2 HSPs)
chr3 (94-185)||(34706150-34706241)
chr3 (131-187)||(3916163-3916218)
[»] chr6 (4 HSPs)
chr6 (109-192)||(6067533-6067616)
chr6 (118-192)||(30775224-30775298)
chr6 (108-192)||(6420251-6420335)
chr6 (80-184)||(30326650-30326754)
[»] chr8 (6 HSPs)
chr8 (94-192)||(15808691-15808789)
chr8 (98-189)||(3036500-3036591)
chr8 (96-174)||(3049087-3049165)
chr8 (96-184)||(32615828-32615916)
chr8 (118-172)||(45312832-45312886)
chr8 (96-181)||(29912131-29912216)
[»] chr5 (2 HSPs)
chr5 (108-187)||(34903364-34903443)
chr5 (118-192)||(2523809-2523883)
[»] chr7 (3 HSPs)
chr7 (140-192)||(28517776-28517828)
chr7 (96-151)||(24934737-24934792)
chr7 (94-192)||(42386170-42386265)
[»] chr1 (1 HSPs)
chr1 (120-188)||(39527013-39527081)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 194 - 376
Target Start/End: Original strand, 6508504 - 6508686
Alignment:
Q  194 cattttaagctccacaactgtgctttgaatttttacagcagtcactttcttcatagttacaacatttgacagttaaaaaatgtgttattttgcttattgt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6508504 cattttaagctccacaactgtgctttgaatttttacagcagtcactttcttcatagttacaacatttgacagttaaaaaatgtgttatttttcttattgt 6508603  T
Q  294 aggaaaacaaaacaatatttagtactgtaagaatagaccttttgcattagtaaaactttatttttgtgactaaagtaaacaat 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6508604 aggaaaacaaaacaatatttagtactgtaagaatagaccttttgcattagtaaaactttatttttgtgactaaagtaaacaat 6508686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 6508298 - 6508431
Alignment:
Q  49 agaatgcaaaattgcacattagttgcgttagagtgccctaaaagtatttgataaaaagtttaaagtaagaactttatctttgaaattgtgcattcaactt 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||    
T  6508298 agaatgcaaaattgcacattagttgcgttagagtgccctaaaagtatttgataaaaagtttaaagt----------tctttgaaattgtgcattcaactt 6508387  T
Q  149 attgaaagattaaacaacaactttttctacatgaaatttaacaa 192  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  6508388 attgaaagattaaataacaactttttcttcatgaaatttaacaa 6508431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 121 - 192
Target Start/End: Original strand, 44949238 - 44949309
Alignment:
Q  121 tttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaatttaacaa 192  Q
    ||||||||  |||||||| ||||||||||||||||||||||| |||||| |||||||| | |||||||||||    
T  44949238 tttatcttgaaaattgtgtattcaacttattgaaagattaaaaaacaacattttctacgtaaaatttaacaa 44949309  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 42088484 - 42088552
Alignment:
Q  118 aactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaatt 186  Q
    ||||||||||| ||||||||  ||||||| ||||||||||||||| | ||||||||||||||| |||||    
T  42088484 aactttatcttggaaattgtttattcaacctattgaaagattaaaaagcaactttttctacataaaatt 42088552  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 9583044 - 9582992
Alignment:
Q  133 attgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaatt 186  Q
    |||||| ||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  9583044 attgtgtattcaacttattgaatgattaaaaaacaac-ttttctacatgaaatt 9582992  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 13266498 - 13266458
Alignment:
Q  133 attgtgcattcaacttattgaaagattaaacaacaactttt 173  Q
    |||||||||||||||||||||||||||||| | ||||||||    
T  13266498 attgtgcattcaacttattgaaagattaaaaagcaactttt 13266458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 40142081 - 40141979
Alignment:
Q  82 tgccctaaaagtatttgataaaaagtttaaagtaagaactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatg 181  Q
    |||||||| || | ||||||| ||||||||||||| || ||||||||  || ||||  |||||||| ||||||| |  ||| | ||||||| ||||||||    
T  40142081 tgccctaagagcagttgataagaagtttaaagtaaaaaatttatcttaaaatttgtatattcaactcattgaaacaccaaaaagcaactttatctacatg 40141982  T
Q  182 aaa 184  Q
    |||    
T  40141981 aaa 40141979  T

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Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 39292295 - 39292389
Alignment:
Q  93 tatttgataaaaagtttaaagtaagaactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaattt 187  Q
    |||||||||||||  ||||||||  ||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||||||| ||||||    
T  39292295 tatttgataaaaaacttaaagtagcaactttatcttggaaattatgcattcaacttattgaaagattaaaaagcaactttttctacattaaattt 39292389  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 37175853 - 37175750
Alignment:
Q  96 ttgataaaaagtttaaagtaagaactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaatttaacaacca 195  Q
    ||||||| ||| ||||||||  ||||||||||| |||||| |||||||||||||||||||||||||| | ||  |||||||| || |||||| ||||| |    
T  37175853 ttgataagaagcttaaagtagcaactttatcttggaaattatgcattcaacttattgaaagattaaaaagcacatttttctatataaaatttcacaacta 37175754  T
Q  196 tttt 199  Q
    ||||    
T  37175753 tttt 37175750  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 24943646 - 24943575
Alignment:
Q  121 tttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaatttaacaa 192  Q
    ||||||||  |||||||| ||| || |||||||||||||||| ||||||||||||||||| || ||||||||    
T  24943646 tttatcttgaaaattgtgtatttaatttattgaaagattaaaaaacaactttttctacataaagtttaacaa 24943575  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 50620627 - 50620693
Alignment:
Q  121 tttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaattt 187  Q
    |||||||| |||||||||||||||||||||||||| | |||| | |||||||||||| || ||||||    
T  50620627 tttatcttggaaattgtgcattcaacttattgaaatagtaaaaagcaactttttctatataaaattt 50620693  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 26009798 - 26009714
Alignment:
Q  96 ttgataaaaagtttaaagtaagaactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacat 180  Q
    ||||||| || |||||||||| ||||||||||| ||| ||||| ||||||  |||||||| |||||| | ||||||||| |||||    
T  26009798 ttgataagaaatttaaagtaaaaactttatcttggaatttgtgtattcaaaatattgaaatattaaaaagcaactttttatacat 26009714  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 44369018 - 44369062
Alignment:
Q  118 aactttatctttgaaattgtgcattcaacttattgaaagattaaa 162  Q
    |||||||||||  |||||||| |||||| ||||||||||||||||    
T  44369018 aactttatcttaaaaattgtgtattcaatttattgaaagattaaa 44369062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1137 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 828 - 912
Alignment:
Q  108 ttaaagtaagaactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaatttaacaa 192  Q
    ||||||||  |||||| |||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||    
T  828 ttaaagtagtaactttgtcttggaaattgtgcattcaacttattgaaagattaaaacacaactttttctacatgaaatttcacaa 912  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 34706150 - 34706241
Alignment:
Q  94 atttgataaaaagtttaaagtaagaactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaat 185  Q
    ||||||||||||| ||||| ||| || |||||||||||||||||||||| |||||||||||||| |||| | ||||||||| ||||||||||    
T  34706150 atttgataaaaagcttaaaataacaattttatctttgaaattgtgcatttaacttattgaaagaataaaaatcaactttttttacatgaaat 34706241  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 3916218 - 3916163
Alignment:
Q  131 aaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaattt 187  Q
    |||||| |||||||||||||| |||||||||| | ||| ||||| ||||||||||||    
T  3916218 aaattgcgcattcaacttatttaaagattaaaaagcaa-tttttttacatgaaattt 3916163  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 6067616 - 6067533
Alignment:
Q  109 taaagtaagaactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaatttaacaa 192  Q
    |||||||  ||||||||||| ||||||||| ||||||||||||||| ||||||| |  ||||||||||||||||||||||||||    
T  6067616 taaagtatcaactttatcttagaaattgtgtattcaacttattgaacgattaaaaagaaactttttctacatgaaatttaacaa 6067533  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 30775224 - 30775298
Alignment:
Q  118 aactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaatttaacaa 192  Q
    |||||||| || ||||||||  ||||||||||||||||||||||| || ||||||||||| ||||||||||||||    
T  30775224 aactttattttagaaattgtatattcaacttattgaaagattaaaaaataactttttctatatgaaatttaacaa 30775298  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 6420335 - 6420251
Alignment:
Q  108 ttaaagtaagaactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaatttaacaa 192  Q
    ||||||||  |||||||| || |||| |||||||||||||| |||||| | |||| | |||| |||||||| |||||||| ||||    
T  6420335 ttaaagtagtaactttattttggaaaatgtgcattcaactttttgaaatagtaaaaagcaacattttctacttgaaatttcacaa 6420251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 30326650 - 30326754
Alignment:
Q  80 agtgccctaaaagtatttgataaaaagtttaaagtaagaactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctaca 179  Q
    |||||||| || | ||||||||| ||||||||| |   || |||||||| | | ||||| |||||||  ||||||| || ||| ||||||||||||||||    
T  30326650 agtgcccttaaggcatttgataagaagtttaaaatggaaattttatcttgggatttgtgtattcaacacattgaaacatcaaagaacaactttttctaca 30326749  T
Q  180 tgaaa 184  Q
    |||||    
T  30326750 tgaaa 30326754  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 15808789 - 15808691
Alignment:
Q  94 atttgataaaaagtttaaagtaagaactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaatttaacaa 192  Q
    ||||||||||||||||||||||  || ||||||||  |||||||| ||| ||||||||||||||||||| |  |||||||| ||||| |||||||||||    
T  15808789 atttgataaaaagtttaaagtagcaattttatcttaaaaattgtgtatttaacttattgaaagattaaaaaggaactttttatacataaaatttaacaa 15808691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 3036591 - 3036500
Alignment:
Q  98 gataaaaagtttaaagtaagaactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaatttaa 189  Q
    ||||| ||||||||||||  |||||||||||  |||||||| |||||||||||| |||||||||| |||||||||||  |||| ||||||||    
T  3036591 gataataagtttaaagtagcaactttatcttaaaaattgtgtattcaacttattaaaagattaaaaaacaacttttttcacataaaatttaa 3036500  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 3049165 - 3049087
Alignment:
Q  96 ttgataaaaagtttaaagtaagaactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaacttttt 174  Q
    ||||||| ||| ||||||||| ||||||||||| ||||||||| |||||| |||||||||| ||||| |||| ||||||    
T  3049165 ttgataagaagcttaaagtaacaactttatcttagaaattgtgtattcaatttattgaaagtttaaaaaacatcttttt 3049087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 32615828 - 32615916
Alignment:
Q  96 ttgataaaaagtttaaagtaagaactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaa 184  Q
    ||||||| ||||||||||||  || |||||||| ||| | ||| |||||||  ||||||| |||||| ||||||||| | |||||||||    
T  32615828 ttgataagaagtttaaagtagaaattttatcttggaattcgtgtattcaacacattgaaacattaaaaaacaactttatttacatgaaa 32615916  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 45312886 - 45312832
Alignment:
Q  118 aactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaacttt 172  Q
    ||||| |||||  |||||||| ||||||||||||||||||||||| | |||||||    
T  45312886 aacttcatcttgtaaattgtgtattcaacttattgaaagattaaaaagcaacttt 45312832  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 29912131 - 29912216
Alignment:
Q  96 ttgataaaaagtttaaagtaagaactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatg 181  Q
    ||||||| ||||||||||||  || ||||||||  || ||||| |||||||| ||||||| || ||| | ||||||| ||||||||    
T  29912131 ttgataagaagtttaaagtagaaattttatcttaaaatttgtgtattcaactcattgaaacatcaaaaagcaactttatctacatg 29912216  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 34903443 - 34903364
Alignment:
Q  108 ttaaagtaagaactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaattt 187  Q
    ||||||||  |||||||||||  ||||||||||||||||||||||||| | |||| | ||| ||||||||||||||||||    
T  34903443 ttaaagtagtaactttatcttgaaaattgtgcattcaacttattgaaatagtaaaaagcaattttttctacatgaaattt 34903364  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 2523809 - 2523883
Alignment:
Q  118 aactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaatttaacaa 192  Q
    ||||||||||| |||||| ||||||||||||||||||  | |||| | ||||||||| |||||||||||| ||||    
T  2523809 aactttatcttagaaattatgcattcaacttattgaattagtaaaaagcaactttttatacatgaaatttcacaa 2523883  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 28517776 - 28517828
Alignment:
Q  140 attcaacttattgaaagattaaacaacaactttttctacatgaaatttaacaa 192  Q
    ||||||||||||||||||||||| | ||||||||| |||||||||||||||||    
T  28517776 attcaacttattgaaagattaaaaagcaactttttttacatgaaatttaacaa 28517828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 24934737 - 24934792
Alignment:
Q  96 ttgataaaaagtttaaagtaagaactttatctttgaaattgtgcattcaacttatt 151  Q
    ||||||| ||||||||||||  ||||||||||| ||||||||||||||||||||||    
T  24934737 ttgataagaagtttaaagtagcaactttatcttagaaattgtgcattcaacttatt 24934792  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 42386170 - 42386265
Alignment:
Q  94 atttgataaaaagtttaaagtaagaactttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaatttaacaa 192  Q
    ||||||||| ||||| ||| ||  || ||||||||  |||||||||||| || |||||||||||||||| || ||   ||||||||| |||||||||||    
T  42386170 atttgataagaagttcaaaatagtaattttatcttaaaaattgtgcatttaatttattgaaagattaaaaaaaaa---tttctacataaaatttaacaa 42386265  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 39527013 - 39527081
Alignment:
Q  120 ctttatctttgaaattgtgcattcaacttattgaaagattaaacaacaactttttctacatgaaattta 188  Q
    ||||||||| |||||||||||||||||  ||||||| |  ||| |  |||||||||||||| |||||||    
T  39527013 ctttatcttggaaattgtgcattcaacccattgaaacaacaaaaaggaactttttctacataaaattta 39527081  T

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