View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18273_low_13 (Length: 361)
Name: NF18273_low_13
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18273_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 8 - 348
Target Start/End: Complemental strand, 36951069 - 36950725
Alignment:
| Q |
8 |
gacatcatcatttgtaaaggacttctcttcaaacctacgttaacaagaaacagttaaataacaatacattgctacatgcatacagaacagaatacacggt |
107 |
Q |
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| T |
36951069 |
gacatcaccatttgtaaaggacttctcttcaaacctacgttaacaggaaacagttaaataacaatacattgctacatgcatacagaacagaatacacggt |
36950970 |
T |
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| Q |
108 |
caaaacaaaatacaaaa-caaaggagaatgaataggaaag--tagtaatttctatgaacattaccttccattgtcctccatgactagcagaatatcacta |
204 |
Q |
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| T |
36950969 |
caaaacaaaatacaaaaacaaaggagaatgaataggaaagaatagtaatttctatgaacattaccttccattgtcctccatgactagcagaatatcacta |
36950870 |
T |
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| Q |
205 |
atttatttagataacttcaggaagtgagccatttcttttgaaaggttaaacatgttactcacagctaagat-nnnnnnnttcatcttctcatccaccagc |
303 |
Q |
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| T |
36950869 |
atttatttagataacttcaggaagtgagccatttcttttgaaaggttaaacatgttactcacagctaagataaaaaaaattcatcttctcatcgaccagc |
36950770 |
T |
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| Q |
304 |
tttttattgtgacccaatctgaaacatatacagccaatataatga |
348 |
Q |
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| T |
36950769 |
tttttattgtgacccaatctgaaacatatacagccaatataatga |
36950725 |
T |
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