View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18273_low_14 (Length: 348)
Name: NF18273_low_14
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18273_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 5676482 - 5676157
Alignment:
| Q |
18 |
gtatagagccttagacatctatttaaaggtaaaattgtagtcatttgataaagtttttgccatttnnnnnnntctatttaaaggtaaaaattgcagtcat |
117 |
Q |
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| T |
5676482 |
gtatagagccttagacatctatttaaaggtaaaattgtagtcatttgataaagtttttgccatttaaaaaaatctatttaaaggtaaaaattgcagtcat |
5676383 |
T |
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| Q |
118 |
ttctagagctagatttcgcttgtgttggtatcacggtgagtatgttggaaccaagatgaccctaccatgactttccaaaagctacacagatctcagtcgg |
217 |
Q |
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| T |
5676382 |
ttctagagctagatttcgcttgtgttggtatcacggtgagtatgttggaaccaagatgaccctaccatgactttccaaaagctacacagatctcagtcgg |
5676283 |
T |
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| Q |
218 |
atgaaaattggatgactcgtattttgatttcaccaaatccgttttaaaactactacttagaatatgaattatctcacaatcatctaattctacatcctat |
317 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5676282 |
atgaaaattggatgactcatattttgatttcaccaaatccgttttaaaactactacttagaatatgaattatctcacaatcatctaattctacatcctat |
5676183 |
T |
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| Q |
318 |
ctctgtatggaaatagattatctgtg |
343 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
5676182 |
ctctctatggaaatagattatctgtg |
5676157 |
T |
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