View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18273_low_16 (Length: 317)
Name: NF18273_low_16
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18273_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 38180688 - 38180994
Alignment:
| Q |
1 |
ccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaatagcacgaaccagtagagtaaaggaag |
100 |
Q |
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| T |
38180688 |
ccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaatagcacgaaccagtagagtaaaggaag |
38180787 |
T |
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| Q |
101 |
tgtgatatgcaacggttatgcatgtatatggatggatagcataagccaagtgtttttatacaagtggtgtccatgctgacgttcgggatgaccaagtact |
200 |
Q |
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| T |
38180788 |
tgtgatatgcaacggttatgaatgtatatggatggatagcataagctaagtgtttttatacaagtggtgtccatgctgacgttcgggatgaccaagttct |
38180887 |
T |
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| Q |
201 |
gtggggtactcatctataagcatgnnnnnnnacaactcatttatctcttgatccttgttaatagtttttcttagaatcttttt-tatccactcctaccgt |
299 |
Q |
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| T |
38180888 |
gtggggtactcatccataagcatgtttttctacaactcatttatctcttgatccttgttaatagtttttcttagaatctttttacatccagtcctaccgt |
38180987 |
T |
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| Q |
300 |
tgatgat |
306 |
Q |
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| T |
38180988 |
tgatgat |
38180994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 38185357 - 38185435
Alignment:
| Q |
1 |
ccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaatagcac |
79 |
Q |
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| T |
38185357 |
ccgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtaatggtggcttgtgaaaatgcaatagcac |
38185435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 38170877 - 38170947
Alignment:
| Q |
4 |
tgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaat |
74 |
Q |
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| T |
38170877 |
tgtagtgggtatgttatgatgaggaagtggtggttttgcgccatggtagtggtggattgtgaaaatgcaat |
38170947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 17213264 - 17213226
Alignment:
| Q |
234 |
aactcatttatctcttgatccttgttaatagtttttctt |
272 |
Q |
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| T |
17213264 |
aactcattaatctctagatccttgttaatagtttttctt |
17213226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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