View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18273_low_20 (Length: 306)
Name: NF18273_low_20
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18273_low_20 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 306
Target Start/End: Original strand, 45303319 - 45303609
Alignment:
| Q |
13 |
aaaatccaacacctaacaaacaaaaaagcaaagtcttttctaatcagtttttcaagggaagaaactcaataaactggttgggtgcattgattgctgaagc |
112 |
Q |
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| T |
45303319 |
aaaatccaacacctaacaaacaaaaaagcaaagtcttttctaatcagtttttcaagggaagaaactcaataaactggttgggtgcattgattgctgaagc |
45303418 |
T |
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| Q |
113 |
tgatatctgtgtctctttgataatgttnnnnnnnnnnnnnnnnnnnncagtgcatccatgatctccattccttattgggaaaagttgaagggtttgatca |
212 |
Q |
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| T |
45303419 |
tgatatctgtgtctctttgataatgttatgatgatgatgatgat---cagtgcatccatgatctccattccttattgggaaaagttgaagggtttgatca |
45303515 |
T |
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| Q |
213 |
gattcattttgatgagtactactagtatttaagtggataaaagcgttttctctttctttgtatgtgtgaggtgaaatgaataagttgagttcat |
306 |
Q |
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| T |
45303516 |
gattcattttgatgagtactactagtatttaagtggataaaagcgttttctctttctttgtatgtgtgaggtgaaatgaataagttgagttcat |
45303609 |
T |
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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 45150267 - 45150317
Alignment:
| Q |
167 |
tccatgatctccattccttattgggaaaagttgaagggtttgatcagattc |
217 |
Q |
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| T |
45150267 |
tccatgacttccattccttattgggaaaagttgaagggtttggtcagattc |
45150317 |
T |
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