View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18273_low_21 (Length: 278)

Name: NF18273_low_21
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18273_low_21
NF18273_low_21
[»] chr6 (38 HSPs)
chr6 (103-261)||(25538945-25539103)
chr6 (103-261)||(26143270-26143428)
chr6 (107-261)||(25580128-25580282)
chr6 (103-261)||(25483462-25483619)
chr6 (103-258)||(26056325-26056479)
chr6 (103-258)||(26076295-26076449)
chr6 (103-258)||(25511345-25511495)
chr6 (1-61)||(25538843-25538903)
chr6 (1-60)||(25580022-25580081)
chr6 (1-60)||(26143168-26143227)
chr6 (1-61)||(26056229-26056289)
chr6 (1-61)||(26076199-26076259)
chr6 (1-60)||(25482045-25482104)
chr6 (117-261)||(26646894-26647039)
chr6 (117-261)||(26752862-26753007)
chr6 (4-61)||(27592844-27592901)
chr6 (4-61)||(27677438-27677495)
chr6 (4-61)||(27679252-27679309)
chr6 (4-61)||(27706226-27706283)
chr6 (184-234)||(27337728-27337778)
chr6 (184-234)||(27398468-27398518)
chr6 (1-60)||(26646782-26646838)
chr6 (1-60)||(26752750-26752806)
chr6 (4-61)||(26802748-26802805)
chr6 (160-232)||(27427263-27427335)
chr6 (160-237)||(27604348-27604427)
chr6 (171-237)||(27592665-27592731)
chr6 (171-237)||(27679422-27679488)
chr6 (160-237)||(26802904-26802981)
chr6 (160-261)||(27214911-27215012)
chr6 (4-61)||(27698318-27698375)
chr6 (171-232)||(27706053-27706114)
chr6 (173-237)||(28781575-28781639)
chr6 (173-237)||(28786712-28786776)
chr6 (173-237)||(28792833-28792897)
chr6 (26-61)||(25511268-25511303)
chr6 (171-237)||(27698230-27698296)
chr6 (4-46)||(27718218-27718260)
[»] scaffold0003 (1 HSPs)
scaffold0003 (160-232)||(60028-60100)
[»] chr4 (1 HSPs)
chr4 (160-232)||(18074220-18074292)
[»] scaffold0349 (2 HSPs)
scaffold0349 (4-46)||(3259-3301)
scaffold0349 (4-46)||(14195-14237)
[»] chr1 (2 HSPs)
chr1 (1-35)||(28127516-28127550)
chr1 (1-35)||(28164200-28164234)
[»] scaffold0419 (1 HSPs)
scaffold0419 (180-237)||(7968-8025)
[»] scaffold0277 (1 HSPs)
scaffold0277 (180-237)||(13319-13376)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 9e-73; HSPs: 38)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 103 - 261
Target Start/End: Original strand, 25538945 - 25539103
Alignment:
Q  103 cctaaataatctactcttaaagcttaaataggaacatattttctattaatgtttctaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgc 202  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  25538945 cctaaataatctactcttaaaacttaaataggaacacattttctattaatgtttttaaaacaagtgtaagttatttatatgtcaaaaaaattagaattgc 25539044  T
Q  203 ataatatattctcaatacatggatgtgattttgattttagtgtatgttctaacttatct 261  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25539045 ataatatattctcaatacatggatgtgattttgattttagtttatgttctaacttatct 25539103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 103 - 261
Target Start/End: Original strand, 26143270 - 26143428
Alignment:
Q  103 cctaaataatctactcttaaagcttaaataggaacatattttctattaatgtttctaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgc 202  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26143270 cctaaataatctactctcaaagcttaaataggaacacattttctattaatgtttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgc 26143369  T
Q  203 ataatatattctcaatacatggatgtgattttgattttagtgtatgttctaacttatct 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  26143370 ataatatattctcaatacatggatgtgattttgattttagtgtattttctaatttatct 26143428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 107 - 261
Target Start/End: Original strand, 25580128 - 25580282
Alignment:
Q  107 aataatctactcttaaagcttaaataggaacatattttctattaatgtttctaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgcataa 206  Q
    ||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| ||||||||| |||||||| ||||    
T  25580128 aataatctaatcttcaagcttaaataggaacagattttctattaatgtttttaaaacaagtgtaagttaattatatttcaaaaaaggtagaattgaataa 25580227  T
Q  207 tatattctcaatacatggatgtgattttgattttagtgtatgttctaacttatct 261  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25580228 tattttctcaatacatggatgtgattttgattttagtgtatgttctaacttatct 25580282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 103 - 261
Target Start/End: Original strand, 25483462 - 25483619
Alignment:
Q  103 cctaaataatctactcttaaagcttaaataggaacatattttctattaatgtttctaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgc 202  Q
    |||||||||||||||||||||||||||| | | |   |||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  25483462 cctaaataatctactcttaaagcttaaacatggagcgattt-ctattaatggttttaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgc 25483560  T
Q  203 ataatatattctcaatacatggatgtgattttgattttagtgtatgttctaacttatct 261  Q
    || ||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||    
T  25483561 atgatatattctcaatgcatggatatgattttggttttagtgtatgttctaacttatct 25483619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 103 - 258
Target Start/End: Original strand, 26056325 - 26056479
Alignment:
Q  103 cctaaataatctactcttaaagcttaaataggaacatattttctattaatgtttctaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgc 202  Q
    |||||||||||||||||||||||||||| | | |   |||| |||| |||| || |||||| ||||||||||||||||||||||||||||||||||||||    
T  26056325 cctaaataatctactcttaaagcttaaacatggagggattt-ctatcaatggttttaaaactagtgtaagttatttatatgtcaaaaaagttagaattgc 26056423  T
Q  203 ataatatattctcaatacatggatgtgattttgattttagtgtatgttctaactta 258  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  26056424 ataatatattatcaatacatggatgtgattttgattctagtgtatgttctaactta 26056479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 103 - 258
Target Start/End: Original strand, 26076295 - 26076449
Alignment:
Q  103 cctaaataatctactcttaaagcttaaataggaacatattttctattaatgtttctaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgc 202  Q
    |||||||||||||||||||||||||||| | | |   |||| |||| |||| || |||||| ||||||||||||||||||||||||||||||||||||||    
T  26076295 cctaaataatctactcttaaagcttaaacatggagggattt-ctatcaatggttttaaaactagtgtaagttatttatatgtcaaaaaagttagaattgc 26076393  T
Q  203 ataatatattctcaatacatggatgtgattttgattttagtgtatgttctaactta 258  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  26076394 ataatatattatcaatacatggatgtgattttgattctagtgtatgttctaactta 26076449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 258
Target Start/End: Original strand, 25511345 - 25511495
Alignment:
Q  103 cctaaataatctactcttaaagcttaaataggaacatattttctattaatgtttctaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgc 202  Q
    |||||||||||||||||||||||||||| | | |   |||| ||||||||| || |||||||||||||||||||    |||| |||||| ||||||||||    
T  25511345 cctaaataatctactcttaaagcttaaacatggagcgattt-ctattaatggttttaaaacaagtgtaagttat----atgtaaaaaaatttagaattgc 25511439  T
Q  203 ataatatattctcaatacatggatgtgattttgattttagtgtatgttctaactta 258  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  25511440 ataatatattatcaatacatggatgtgattttgattctagtgtatgttctaactta 25511495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 25538843 - 25538903
Alignment:
Q  1 caagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaat 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25538843 caagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaat 25538903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25580022 - 25580081
Alignment:
Q  1 caagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaa 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25580022 caagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaa 25580081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26143168 - 26143227
Alignment:
Q  1 caagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaa 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26143168 caagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaa 26143227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26056229 - 26056289
Alignment:
Q  1 caagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaat 61  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  26056229 caagctgctaacttgtccggctatcattatagtcctcatgagtaccctactttacttaaat 26056289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26076199 - 26076259
Alignment:
Q  1 caagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaat 61  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  26076199 caagctgctaacttgtccggctatcattatagtcctcatgagtaccctactttacttaaat 26076259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25482045 - 25482104
Alignment:
Q  1 caagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaa 60  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  25482045 caagctgctaatttgtccggctatcattatagtcctcatgagtaccccactttacttaaa 25482104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 261
Target Start/End: Original strand, 26646894 - 26647039
Alignment:
Q  117 tcttaaagcttaaataggaa---catattttctattaatgtttctaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgcataatatattc 213  Q
    ||||||||||||||||||||   |||||||| ||||||||||| |||| ||||| ||| ||||||||||||||||| |||||||| || |||||||||||    
T  26646894 tcttaaagcttaaataggaaacacatatttt-tattaatgtttttaaa-caagtataaattatttatatgtcaaaagagttagaactgtataatatattc 26646991  T
Q  214 tcaatacatggatgtgattttgattttagtgtatgttctaacttatct 261  Q
    ||  |||||  ||||  || |||| || ||| |||| |||||||||||    
T  26646992 tcggtacatcaatgtatttgtgatgttggtgcatgtactaacttatct 26647039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 261
Target Start/End: Original strand, 26752862 - 26753007
Alignment:
Q  117 tcttaaagcttaaataggaa---catattttctattaatgtttctaaaacaagtgtaagttatttatatgtcaaaaaagttagaattgcataatatattc 213  Q
    ||||||||||||||||||||   |||||||| ||||||||||| |||| ||||| ||| ||||||||||||||||| |||||||| || |||||||||||    
T  26752862 tcttaaagcttaaataggaaacacatatttt-tattaatgtttttaaa-caagtataaattatttatatgtcaaaagagttagaactgtataatatattc 26752959  T
Q  214 tcaatacatggatgtgattttgattttagtgtatgttctaacttatct 261  Q
    ||  |||||  ||||  || |||| || ||| |||| |||||||||||    
T  26752960 tcggtacatcaatgtatttgtgatgttggtgcatgtactaacttatct 26753007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 27592901 - 27592844
Alignment:
Q  4 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaat 61  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||    
T  27592901 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaat 27592844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 27677495 - 27677438
Alignment:
Q  4 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaat 61  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||    
T  27677495 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaat 27677438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 27679252 - 27679309
Alignment:
Q  4 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaat 61  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||    
T  27679252 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaat 27679309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 27706283 - 27706226
Alignment:
Q  4 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaat 61  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||    
T  27706283 gctgctaacttgtccggctaccatgatagtcctcctgggtacccaactttacttaaat 27706226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 27337778 - 27337728
Alignment:
Q  184 tcaaaaaagttagaattgcataatatattctcaatacatggatgtgatttt 234  Q
    |||||| ||||||||||| |||||||||| |||||||||||||||||||||    
T  27337778 tcaaaacagttagaattgtataatatattgtcaatacatggatgtgatttt 27337728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 27398518 - 27398468
Alignment:
Q  184 tcaaaaaagttagaattgcataatatattctcaatacatggatgtgatttt 234  Q
    |||||| ||||||||||| |||||||||| |||||||||||||||||||||    
T  27398518 tcaaaacagttagaattgtataatatattgtcaatacatggatgtgatttt 27398468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26646782 - 26646838
Alignment:
Q  1 caagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaa 60  Q
    |||||||||||||||||||| || |||||||||||   ||||||||||||||||||||||    
T  26646782 caagctgctaacttgtccggataccattatagtcc---tgggtaccccactttacttaaa 26646838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 26752750 - 26752806
Alignment:
Q  1 caagctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaa 60  Q
    |||||||||||||||||||| || |||||||||||   ||||||||||||||||||||||    
T  26752750 caagctgctaacttgtccggataccattatagtcc---tgggtaccccactttacttaaa 26752806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 26802748 - 26802805
Alignment:
Q  4 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaat 61  Q
    |||||||||||||||||||| ||| ||||||||| | ||||||| |||||||||||||    
T  26802748 gctgctaacttgtccggctaccatgatagtcctcctcggtacccaactttacttaaat 26802805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 27427335 - 27427263
Alignment:
Q  160 aaacaagtgtaagttatttatatgtcaaaaaagttagaattgcataatatattctcaatacatggatgtgatt 232  Q
    |||||| ||| ||||||||||||||||||| ||||| || || |||||||||| | | |||||||||||||||    
T  27427335 aaacaattgttagttatttatatgtcaaaatagttaaaaatgtataatatattatgagtacatggatgtgatt 27427263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 27604427 - 27604348
Alignment:
Q  160 aaacaagtgtaagttatttatatgtcaaaaaagttagaattgcataatatattctca--atacatggatgtgattttgat 237  Q
    |||||||| | ||||||||||||||||||| |||||||| || |||||||||||| |   ||||||||||||||| ||||    
T  27604427 aaacaagtattagttatttatatgtcaaaatagttagaaatgtataatatattctgagtgtacatggatgtgattatgat 27604348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 27592731 - 27592665
Alignment:
Q  171 agttatttatatgtcaaaaaagttagaattgcataatatattctcaatacatggatgtgattttgat 237  Q
    ||||||||||||||| ||| |||||||| || |||||| ||||| | ||||||||||||||| ||||    
T  27592731 agttatttatatgtcgaaatagttagaaatgtataatacattcttagtacatggatgtgattgtgat 27592665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 27679422 - 27679488
Alignment:
Q  171 agttatttatatgtcaaaaaagttagaattgcataatatattctcaatacatggatgtgattttgat 237  Q
    ||||||||||||||| ||| |||||||| || |||||| ||||| | ||||||||||||||| ||||    
T  27679422 agttatttatatgtcgaaatagttagaaatgtataatacattcttagtacatggatgtgattgtgat 27679488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 26802904 - 26802981
Alignment:
Q  160 aaacaagtgtaagttatttatatgtcaaaaaagttagaattgcataatatattctcaatacatggatgtgattttgat 237  Q
    |||||||| | ||||||||||||||  ||| |||||||| || |||||||||| | | ||||||||||||||| ||||    
T  26802904 aaacaagtattagttatttatatgttgaaatagttagaaatgtataatatattatgagtacatggatgtgattgtgat 26802981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 261
Target Start/End: Original strand, 27214911 - 27215012
Alignment:
Q  160 aaacaagtgtaagttatttatatgtcaaaaaagttagaattgcataatatattctcaatacatggatgtgattttgattttagtgtatgttctaacttat 259  Q
    |||||||| |||||  ||||||||| ||||  |||||||||  |||||| | ||||| ||||||||| |||| ||||| || |||||||  |||||||||    
T  27214911 aaacaagtataagtgttttatatgtgaaaagggttagaattatataatacaatctcagtacatggatctgatattgatgttggtgtatgcactaacttat 27215010  T
Q  260 ct 261  Q
    ||    
T  27215011 ct 27215012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 27698375 - 27698318
Alignment:
Q  4 gctgctaacttgtccggctatcattatagtcctcatgggtaccccactttacttaaat 61  Q
    |||||||||||||||||||| ||| |||||||||   ||||||| |||||||||||||    
T  27698375 gctgctaacttgtccggctaccatgatagtcctcccaggtacccaactttacttaaat 27698318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 27706114 - 27706053
Alignment:
Q  171 agttatttatatgtcaaaaaagttagaattgcataatatattctcaatacatggatgtgatt 232  Q
    ||||||||||||||| ||| |||||||| || |||||| ||||| | |||||||||||||||    
T  27706114 agttatttatatgtcgaaatagttagaaatgaataatacattcttagtacatggatgtgatt 27706053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 28781575 - 28781639
Alignment:
Q  173 ttatttatatgtcaaaaaagttagaattgcataatatattctcaatacatggatgtgattttgat 237  Q
    |||||| |||||||||| |||||||| || ||| |||||||| | ||||||||||||||| ||||    
T  28781575 ttatttttatgtcaaaatagttagaaatgtatactatattctgagtacatggatgtgattgtgat 28781639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 28786712 - 28786776
Alignment:
Q  173 ttatttatatgtcaaaaaagttagaattgcataatatattctcaatacatggatgtgattttgat 237  Q
    |||||| |||||||||| |||||||| || ||| |||||||| | ||||||||||||||| ||||    
T  28786712 ttatttttatgtcaaaatagttagaaatgtatactatattctgagtacatggatgtgattgtgat 28786776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 28792833 - 28792897
Alignment:
Q  173 ttatttatatgtcaaaaaagttagaattgcataatatattctcaatacatggatgtgattttgat 237  Q
    |||||| |||||||||| |||||||| || ||| |||||||| | ||||||||||||||| ||||    
T  28792833 ttatttttatgtcaaaatagttagaaatgtatactatattctgagtacatggatgtgattgtgat 28792897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 25511268 - 25511303
Alignment:
Q  26 attatagtcctcatgggtaccccactttacttaaat 61  Q
    |||||||||||||||||||||| |||||||||||||    
T  25511268 attatagtcctcatgggtaccctactttacttaaat 25511303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 27698296 - 27698230
Alignment:
Q  171 agttatttatatgtcaaaaaagttagaattgcataatatattctcaatacatggatgtgattttgat 237  Q
    ||||||||||||||| ||| |||||||| |  |||||||||||| | ||||| ||||||||| ||||    
T  27698296 agttatttatatgtcgaaatagttagaaatttataatatattctgagtacatagatgtgattgtgat 27698230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 27718260 - 27718218
Alignment:
Q  4 gctgctaacttgtccggctatcattatagtcctcatgggtacc 46  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||    
T  27718260 gctgctaacttgtccggctaccatgatagtcctcctgggtacc 27718218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 60028 - 60100
Alignment:
Q  160 aaacaagtgtaagttatttatatgtcaaaaaagttagaattgcataatatattctcaatacatggatgtgatt 232  Q
    |||||| ||| ||||||||||||||||||| ||||| || || |||||||||| | | |||||||||||||||    
T  60028 aaacaattgttagttatttatatgtcaaaatagttaaaaatgtataatatattatgagtacatggatgtgatt 60100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 18074220 - 18074292
Alignment:
Q  160 aaacaagtgtaagttatttatatgtcaaaaaagttagaattgcataatatattctcaatacatggatgtgatt 232  Q
    |||||| ||| ||||||||||||||||||| ||||| || || |||||||||| | | |||||||||||||||    
T  18074220 aaacaattgttagttatttatatgtcaaaatagttaaaaatgtataatatattatgagtacatggatgtgatt 18074292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 3301 - 3259
Alignment:
Q  4 gctgctaacttgtccggctatcattatagtcctcatgggtacc 46  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||    
T  3301 gctgctaacttgtccggctaccatgatagtcctcctgggtacc 3259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 14237 - 14195
Alignment:
Q  4 gctgctaacttgtccggctatcattatagtcctcatgggtacc 46  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||    
T  14237 gctgctaacttgtccggctaccatgatagtcctcctgggtacc 14195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28127550 - 28127516
Alignment:
Q  1 caagctgctaacttgtccggctatcattatagtcc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  28127550 caagctgctaacttgtccggctaccattatagtcc 28127516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28164234 - 28164200
Alignment:
Q  1 caagctgctaacttgtccggctatcattatagtcc 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  28164234 caagctgctaacttgtccggctaccattatagtcc 28164200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 7968 - 8025
Alignment:
Q  180 tatgtcaaaaaagttagaattgcataatatattctcaatacatggatgtgattttgat 237  Q
    |||||||||| |||||||| || ||| |||||||| | ||||||||||||||| ||||    
T  7968 tatgtcaaaatagttagaaatgtatactatattctgagtacatggatgtgattgtgat 8025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 13376 - 13319
Alignment:
Q  180 tatgtcaaaaaagttagaattgcataatatattctcaatacatggatgtgattttgat 237  Q
    |||||||||| |||||||| || ||| |||||||| | ||||||||||||||| ||||    
T  13376 tatgtcaaaatagttagaaatgtatactatattctgagtacatggatgtgattgtgat 13319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University