View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18273_low_23 (Length: 266)

Name: NF18273_low_23
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18273_low_23
NF18273_low_23
[»] chr5 (2 HSPs)
chr5 (1-247)||(9712327-9712573)
chr5 (88-152)||(16127056-16127120)
[»] chr7 (2 HSPs)
chr7 (25-75)||(36909607-36909657)
chr7 (88-141)||(6824305-6824358)
[»] scaffold0316 (1 HSPs)
scaffold0316 (31-74)||(16023-16066)
[»] chr4 (2 HSPs)
chr4 (88-138)||(4161642-4161692)
chr4 (88-125)||(971878-971915)
[»] chr6 (1 HSPs)
chr6 (6-75)||(2782983-2783052)
[»] chr2 (2 HSPs)
chr2 (9-50)||(37561553-37561594)
chr2 (88-152)||(17220847-17220911)
[»] chr8 (1 HSPs)
chr8 (35-75)||(6020663-6020703)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 9712573 - 9712327
Alignment:
Q  1 taagtttagcggaatcacggcaagccaccatgattttggcaaaagctacattctagagcttcaacaaaatcatggcgccgtgagtactttgaaattttga 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9712573 taagtttagcggaatcacggcaagccaccatggttttggcaaaagctacattttagagcttcaacaaaatcatggcgccgtgagtactttgaaattttga 9712474  T
Q  101 tacattcaaagactattgtgacaacacatcacacatttaaggtccaaaatgattgtttactccattgagaaattacatttttaaggagcatcaaaggtta 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9712473 tacattcaaagactattgtgacaacacatcacacatgtaaggtccaaaatgattgtttactccattgagaaattacatttttaaggagcatcaaaggtta 9712374  T
Q  201 tgaacatgtatctgcttggcaggtatattggagtttctactggtaat 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  9712373 tgaacatgtatctgcttggcaggtatattggagtttctactggtaat 9712327  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 16127120 - 16127056
Alignment:
Q  88 tttgaaattttgatacattcaaagactattgtgacaacacatcacacatttaaggtccaaaatga 152  Q
    |||||||||||||||| || | ||||||||||||| || | | ||||||||| || |||||||||    
T  16127120 tttgaaattttgatactttgagagactattgtgactactccttacacatttagggaccaaaatga 16127056  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 36909607 - 36909657
Alignment:
Q  25 ccaccatgattttggcaaaagctacattctagagcttcaacaaaatcatgg 75  Q
    |||||||||||||| ||| ||||||| |||||||||| |||||||||||||    
T  36909607 ccaccatgattttgacaagagctacactctagagctttaacaaaatcatgg 36909657  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 6824358 - 6824305
Alignment:
Q  88 tttgaaattttgatacattcaaagactattgtgacaacacatcacacatttaag 141  Q
    |||| ||||||||||||| |||||| ||| | || |||||||||||||||||||    
T  6824358 tttgtaattttgatacatgcaaagattatagcgaaaacacatcacacatttaag 6824305  T

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Target: scaffold0316 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 16066 - 16023
Alignment:
Q  31 tgattttggcaaaagctacattctagagcttcaacaaaatcatg 74  Q
    |||||||||||||||||||||| | || ||||||||||||||||    
T  16066 tgattttggcaaaagctacattttggaacttcaacaaaatcatg 16023  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 4161692 - 4161642
Alignment:
Q  88 tttgaaattttgatacattcaaagactattgtgacaacacatcacacattt 138  Q
    ||||||||||||||||||| || |||||||||||| || ||| ||||||||    
T  4161692 tttgaaattttgatacattgaaggactattgtgactactcattacacattt 4161642  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 971915 - 971878
Alignment:
Q  88 tttgaaattttgatacattcaaagactattgtgacaac 125  Q
    ||||||||||||||||||| || |||||||||||||||    
T  971915 tttgaaattttgatacattgaatgactattgtgacaac 971878  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 2782983 - 2783052
Alignment:
Q  6 ttagcggaatcacggcaagccaccatgattttggcaaaagctacattctagagcttcaacaaaatcatgg 75  Q
    |||| ||||||||||| |||||| |||||||||   |||||| || | | ||||||||||||||||||||    
T  2782983 ttagtggaatcacggcgagccactatgattttgttgaaagctgcactttggagcttcaacaaaatcatgg 2783052  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 37561553 - 37561594
Alignment:
Q  9 gcggaatcacggcaagccaccatgattttggcaaaagctaca 50  Q
    ||||||||||||  |||||||||||||||| |||||||||||    
T  37561553 gcggaatcacggtgagccaccatgattttgccaaaagctaca 37561594  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 17220847 - 17220911
Alignment:
Q  88 tttgaaattttgatacattcaaagactattgtgacaacacatcacacatttaaggtccaaaatga 152  Q
    |||| |||||||||||||| |  |||||||||||||  || ||| |||||||||| |||||||||    
T  17220847 tttgtaattttgatacatttagcgactattgtgacaggacttcaaacatttaaggaccaaaatga 17220911  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 6020703 - 6020663
Alignment:
Q  35 tttggcaaaagctacattctagagcttcaacaaaatcatgg 75  Q
    |||||||||| ||||| | ||||||||||||||||||||||    
T  6020703 tttggcaaaaactacactttagagcttcaacaaaatcatgg 6020663  T

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