View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18273_low_24 (Length: 259)

Name: NF18273_low_24
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18273_low_24
NF18273_low_24
[»] chr1 (22 HSPs)
chr1 (1-259)||(14654397-14654655)
chr1 (1-259)||(14664188-14664446)
chr1 (1-257)||(14669766-14670021)
chr1 (1-179)||(14705960-14706138)
chr1 (1-225)||(14716119-14716341)
chr1 (1-163)||(14676520-14676682)
chr1 (1-163)||(14683638-14683800)
chr1 (1-223)||(14708407-14708628)
chr1 (1-157)||(14652419-14652575)
chr1 (1-157)||(14662210-14662366)
chr1 (1-225)||(14674300-14674531)
chr1 (1-225)||(14679678-14679909)
chr1 (1-150)||(14681501-14681649)
chr1 (1-126)||(14667168-14667292)
chr1 (1-83)||(33988038-33988120)
chr1 (1-60)||(28366256-28366315)
chr1 (1-58)||(38175587-38175644)
chr1 (181-257)||(14676460-14676536)
chr1 (181-257)||(14683578-14683654)
chr1 (1-48)||(11872538-11872585)
chr1 (1-45)||(37422175-37422219)
chr1 (10-55)||(28698549-28698594)
[»] chr2 (22 HSPs)
chr2 (1-257)||(30731803-30732058)
chr2 (1-147)||(32917986-32918130)
chr2 (1-83)||(8973280-8973362)
chr2 (1-83)||(8979290-8979372)
chr2 (1-83)||(9023415-9023497)
chr2 (1-83)||(9026754-9026836)
chr2 (1-126)||(30733914-30734038)
chr2 (1-83)||(8984661-8984743)
chr2 (1-83)||(9032021-9032103)
chr2 (1-58)||(43850042-43850099)
chr2 (1-83)||(9020815-9020897)
chr2 (1-83)||(9030366-9030448)
chr2 (1-54)||(9008018-9008071)
chr2 (1-52)||(2841074-2841125)
chr2 (1-83)||(8988423-8988505)
chr2 (1-83)||(9016461-9016543)
chr2 (1-49)||(19232456-19232504)
chr2 (1-83)||(8992116-8992198)
chr2 (1-44)||(10763935-10763978)
chr2 (13-48)||(39814115-39814150)
chr2 (22-83)||(8975663-8975724)
chr2 (1-49)||(6471766-6471813)
[»] chr8 (11 HSPs)
chr8 (1-83)||(41841209-41841291)
chr8 (1-83)||(44878951-44879033)
chr8 (1-83)||(44880888-44880970)
chr8 (1-127)||(10944456-10944581)
chr8 (1-51)||(40054312-40054362)
chr8 (1-49)||(37679757-37679805)
chr8 (1-51)||(37682057-37682107)
chr8 (8-58)||(42872514-42872564)
chr8 (8-59)||(42220909-42220960)
chr8 (5-59)||(42555144-42555198)
chr8 (1-34)||(44582870-44582903)
[»] chr6 (4 HSPs)
chr6 (1-83)||(10795947-10796029)
chr6 (1-60)||(10791709-10791768)
chr6 (1-51)||(30521242-30521292)
chr6 (1-49)||(8875691-8875739)
[»] chr4 (11 HSPs)
chr4 (1-83)||(50077256-50077338)
chr4 (1-63)||(11652449-11652511)
chr4 (1-59)||(49106586-49106644)
chr4 (1-83)||(49108690-49108772)
chr4 (1-60)||(3461199-3461258)
chr4 (1-50)||(26984724-26984773)
chr4 (1-50)||(26998797-26998846)
chr4 (1-50)||(48205832-48205881)
chr4 (5-44)||(26982549-26982588)
chr4 (151-183)||(23267684-23267716)
chr4 (10-46)||(34481155-34481191)
[»] chr5 (4 HSPs)
chr5 (1-83)||(1716509-1716591)
chr5 (1-58)||(7524961-7525018)
chr5 (1-51)||(3643640-3643690)
chr5 (1-47)||(4103249-4103295)
[»] chr3 (1 HSPs)
chr3 (3-49)||(15758562-15758608)
[»] chr7 (1 HSPs)
chr7 (1-51)||(27134511-27134561)


Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 14654397 - 14654655
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatattagacattttctcagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14654397 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggacaagctgctgcttttatattagacattttctcagtt 14654496  T
Q  101 gctttcttgactgctcgatgtgggactatttctcattgtacgcatgtgttgccaacaaagagcagttaccaagcagaggatattgccgacatagaggcca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  14654497 gctttcttgactgctcgatgtgggactatttctcattgtacgcatgtgttgccaacaaagagcaattaccaagcagaggatattgccaacatagaggcca 14654596  T
Q  201 ctaaagcatttcaccaattcatccattacaacatgcatcagctagaaacaatcaatgat 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14654597 ctaaagcatttcaccaattcatccattacaacatgcatcagctagaaacaatcaatgat 14654655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 14664188 - 14664446
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatattagacattttctcagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  14664188 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggacaagctgctgcttttatattagacattttctcagtt 14664287  T
Q  101 gctttcttgactgctcgatgtgggactatttctcattgtacgcatgtgttgccaacaaagagcagttaccaagcagaggatattgccgacatagaggcca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  14664288 gctttcttgactgctcgatgtgggactatttctcattgtacgcatgtgttgccaacaaagagcaattaccaagcagaggatattgccaacatagaggcca 14664387  T
Q  201 ctaaagcatttcaccaattcatccattacaacatgcatcagctagaaacaatcaatgat 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14664388 ctaaagcatttcaccaattcatccattacaacatgcatcagctagaaacaatcaatgat 14664446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 14669766 - 14670021
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatattagacattttctcagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| |||||| |||||||||    
T  14669766 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagtt 14669865  T
Q  101 gctttcttgactgctcgatgtgggactatttctcattgtacgcatgtgttgccaacaaagagcagttaccaagcagaggatattgccgacatagaggcca 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| ||||| || |||    
T  14669866 gctttcttgactactcgatgtgggactatttctcattgtacgcatgtgttgccaacaaagagcaattaccaagcagaggtta-tgccaacatacagccca 14669964  T
Q  201 ctaaagcatttcaccaattcatccattacaacatgcatcagctagaaacaatcaatg 257  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  14669965 ctaaagcatttcaccaattcatccattagaacttgcatcacctagaaacaatcaatg 14670021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 14706138 - 14705960
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatattagacattttctcagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| ||| |  |||||||||    
T  14706138 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcggtgctgcttttatatcagaaacgttctcagtt 14706039  T
Q  101 gctttcttgactgctcgatgtgggactatttctcattgtacgcatgtgttgccaacaaagagcagttaccaagcagagg 179  Q
     ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  14706038 tctttcttgactgctcgatgtgggactatttctcattgtatgcatgtgttgccaacaaagagcaattaccaagcagagg 14705960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 14716341 - 14716119
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatattagacattttctcagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| |||||| |||||||||    
T  14716341 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgaactcggtgctgcttttatatcagacatcttctcagtt 14716242  T
Q  101 gctttcttgactgctcgatgtgggactatttctcattgtacgcatgtgttgccaacaaagagcagttaccaagcagaggatattgccgacatagaggcca 200  Q
      |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||    | |||||||| |||    
T  14716241 attttcgtgactgctcaatgtgggactatttctcattgtacgcatgtgttgccaacaaagagcaatttccaagcagagcata--cgcaacatagagccca 14716144  T
Q  201 ctaaagcatttcaccaattcatcca 225  Q
    | || | ||||||||||||||||||    
T  14716143 ccaacgtatttcaccaattcatcca 14716119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 14676682 - 14676520
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatattagacattttctcagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||  |||||| |||||||||    
T  14676682 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaatatggactagctgccgcttttataacagacatcttctcagtt 14676583  T
Q  101 gctttcttgactgctcgatgtgggactatttctcattgtacgcatgtgttgccaacaaagagc 163  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  14676582 gctttcttgactgctcgatgtgggactatttctcattgtacgtatgtattgccaacaaagagc 14676520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 14683800 - 14683638
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatattagacattttctcagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||  |||||| |||||||||    
T  14683800 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaatatggactagctgccgcttttataacagacatcttctcagtt 14683701  T
Q  101 gctttcttgactgctcgatgtgggactatttctcattgtacgcatgtgttgccaacaaagagc 163  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  14683700 gctttcttgactgctcgatgtgggactatttctcattgtacgtatgtattgccaacaaagagc 14683638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 14708628 - 14708407
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatattagacattttctcagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||  |||||||||||  |||||||||||| ||    
T  14708628 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcactagtgcttttatatctgacattttctcaatt 14708529  T
Q  101 gctttcttgactgctcgatgtgggactatttctcattgtacgcatgtgttgccaacaaagagcagttaccaagcagaggatattgccgacatagaggcca 200  Q
    |||||||||||||||||||||||||||||||||||||| || |||| ||| ||||||||||||| ||||||||||||| ||| |||| ||| |||  |||    
T  14708528 gctttcttgactgctcgatgtgggactatttctcattgcacacatgcgttaccaacaaagagcaattaccaagcagagtata-tgccaacaaagatccca 14708430  T
Q  201 ctaaagcatttcaccaattcatc 223  Q
    ||||| ||||||| |||||||||    
T  14708429 ctaaatcatttcagcaattcatc 14708407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 14652575 - 14652419
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatattagacattttctcagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || || || |||| |||||||||| |||||| |||||| |||||||||    
T  14652575 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgatttcaatgaaggaccagctgctgctcttatatcagacatcttctcagtt 14652476  T
Q  101 gctttcttgactgctcgatgtgggactatttctcattgtacgcatgtgttgccaaca 157  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14652475 gttttcttgactgctcgatgtgggactatttctcattgtacgcatgtgttgccaaca 14652419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 14662366 - 14662210
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatattagacattttctcagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || || || |||| |||||||||| |||||| |||||| |||||||||    
T  14662366 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgatttcaatgaaggaccagctgctgctcttatatcagacatcttctcagtt 14662267  T
Q  101 gctttcttgactgctcgatgtgggactatttctcattgtacgcatgtgttgccaaca 157  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14662266 gttttcttgactgctcgatgtgggactatttctcattgtacgcatgtgttgccaaca 14662210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 14674531 - 14674300
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatattagacattttctcagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| |||||||||||||| ||||| |||||| |||    
T  14674531 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttggaagattggctaggtgctgcttttatatcagaca-tttctccgtt 14674433  T
Q  101 gctttcttgactgctcgatgtgggactatttctcattgtacgcatgtgtt--------gccaac-aaagagcagttaccaagcagaggatattgccgaca 191  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||        |||||| |||||| | ||||||||||| | ||| || | |||    
T  14674432 gctttcttgactgctcgatgtgggactatttcccattgtacgcatgtgttcctactaggccaacaaaagagaaattaccaagcagtgtata-tgtcaaca 14674334  T
Q  192 tagaggccactaaagcatttcaccaattcatcca 225  Q
    ||||| |||||||| ||||||| |||||||||||    
T  14674333 tagagcccactaaatcatttcaacaattcatcca 14674300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 14679909 - 14679678
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatattagacattttctcagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||| |||||||||||||| ||||| |||||| |||    
T  14679909 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttggaagattggctaggtgctgcttttatatcagaca-tttctccgtt 14679811  T
Q  101 gctttcttgactgctcgatgtgggactatttctcattgtacgcatgtgtt--------gccaac-aaagagcagttaccaagcagaggatattgccgaca 191  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||        |||||| |||||| | ||||||||||| | ||| || | |||    
T  14679810 gctttcttgactgctcgatgtgggactatttcccattgtacgcatgtgttcctactaggccaacaaaagagaaattaccaagcagtgtata-tgtcaaca 14679712  T
Q  192 tagaggccactaaagcatttcaccaattcatcca 225  Q
    ||||| |||||||| ||||||| |||||||||||    
T  14679711 tagagcccactaaatcatttcaacaattcatcca 14679678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 14681649 - 14681501
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatattagacattttctcagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| |||||||||||||| ||||| |||||| |||    
T  14681649 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtataagttgaaaaatgggctaggtgctgcttttatatcagaca-tttctccgtt 14681551  T
Q  101 gctttcttgactgctcgatgtgggactatttctcattgtacgcatgtgtt 150  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14681550 gctttcttgactgctcgatgtgggactatttcccattgtacgcatgtgtt 14681501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 14667168 - 14667292
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatattagacattttctcagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  || || ||    |||||||||||||||  ||||| |||||||||    
T  14667168 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttacaacat-gagatcctgctgcttttatatctgacatgttctcagtt 14667266  T
Q  101 gctttcttgactgctcgatgtgggac 126  Q
    | |||||||||| |||||||||||||    
T  14667267 gttttcttgactcctcgatgtgggac 14667292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 33988120 - 33988038
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||    
T  33988120 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactcacttatgcttttatat 33988038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28366256 - 28366315
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaaga 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28366256 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaaga 28366315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 38175587 - 38175644
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38175587 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 38175644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 14676536 - 14676460
Alignment:
Q  181 tattgccgacatagaggccactaaagcatttcaccaattcatccattacaacatgcatcagctagaaacaatcaatg 257  Q
    ||||||| ||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  14676536 tattgccaacaaagagcccactaaagcatttcaccaattcatccattagaacttgcatcagctagaaacaatcaatg 14676460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 14683654 - 14683578
Alignment:
Q  181 tattgccgacatagaggccactaaagcatttcaccaattcatccattacaacatgcatcagctagaaacaatcaatg 257  Q
    ||||||| ||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  14683654 tattgccaacaaagagcccactaaagcatttcaccaattcatccattagaacttgcatcagctagaaacaatcaatg 14683578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11872538 - 11872585
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggta 48  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||    
T  11872538 taagaacagatagtacacttgatcttagtcaaaaggccgagaaaggta 11872585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37422219 - 37422175
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaag 45  Q
    |||||||| || |||||||||||||||||||||||||||||||||    
T  37422219 taagaacatatgctacacttgatcttagccaaaaggccgagaaag 37422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 28698594 - 28698549
Alignment:
Q  10 atactacacttgatcttagccaaaaggccgagaaaggtatgagttg 55  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||||    
T  28698594 atactacatttgatcttagccaaaagaccgagaaatgtatgagttg 28698549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 30732058 - 30731803
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatattagacattttctcagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| |||||| |||||||||    
T  30732058 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttctcagtt 30731959  T
Q  101 gctttcttgactgctcgatgtgggactatttctcattgtacgcatgtgttgccaacaaagagcagttaccaagcagaggatattgccgacatagaggcca 200  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| |||||||| |||    
T  30731958 gctttcttgactactcgatgtgggactatttctcattgtacgcatgtgttgccaacaaagagcaattaccaagcagaggtta-tgccaacatagagccca 30731860  T
Q  201 ctaaagcatttcaccaattcatccattacaacatgcatcagctagaaacaatcaatg 257  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  30731859 ctaaagcatttcaccaattcatccattagaacttgcatcagctagaaacaatcaatg 30731803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 32918130 - 32917986
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatattagacattttctcagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||  | ||||||||  |||    
T  32918130 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaatg-tagactagctgctgcttttatatctg-cattttctatgtt 32918033  T
Q  101 gctttcttgactgctcgatgtgggactatttctcattgtacgcatgt 147  Q
    |||||||||| | |||||||||||||||||||  | |||||||||||    
T  32918032 gctttcttgattcctcgatgtgggactatttcctactgtacgcatgt 32917986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 8973362 - 8973280
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  |||||||||||    
T  8973362 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgaactcgcttatgcttttatat 8973280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 8979372 - 8979290
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  |||||||||||    
T  8979372 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgaacttgcttatgcttttatat 8979290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 9023497 - 9023415
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||  |||||||||||    
T  9023497 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagttggactcgcttatgcttttatat 9023415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 9026836 - 9026754
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||  |||||||||||    
T  9026836 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgaattcgcttatgcttttatat 9026754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 30734038 - 30733914
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatattagacattttctcagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  || || ||    |||||||||||||||  ||||| |||||| ||    
T  30734038 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtataagttacaacat-gagatcctgctgcttttatatctgacatgttctcactt 30733940  T
Q  101 gctttcttgactgctcgatgtgggac 126  Q
    | |||||||||| |||||||||||||    
T  30733939 gttttcttgactcctcgatgtgggac 30733914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 8984743 - 8984661
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||  |||||||||||    
T  8984743 taagaacaaatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaatatgaacttgcttatgcttttatat 8984661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 9032103 - 9032021
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | |||  |||||||||||    
T  9032103 taagaacagatactacacttgatcttaaccaaaaggccgagaaaggtatgagttgaaagatgaattcgcttatgcttttatat 9032021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 43850099 - 43850042
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43850099 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 43850042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 9020897 - 9020815
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| |||  || ||||||||    
T  9020897 taagaacagatactacacttgatcttagccaaaaggccgagaaatgtatgaattgaaagatgaactcgcttatggttttatat 9020815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 9030448 - 9030366
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    |||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||| ||| |||  |||||||||||    
T  9030448 taagaacagatactacacttgatcttagccaaaaggccaagaaaaatatgagttgaaagatgaacttgcttatgcttttatat 9030366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9008071 - 9008018
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9008071 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtt 9008018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2841074 - 2841125
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgag 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2841074 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgag 2841125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 8988505 - 8988423
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    |||||||| ||||||||||||||||| ||||||||||| |||| ||||| |||||||||||| ||| |||  |||||||||||    
T  8988505 taagaacaaatactacacttgatcttcgccaaaaggccaagaatggtataagttgaaagatgaactcgcttatgcttttatat 8988423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 9016543 - 9016461
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    ||||||||||||||||| |||||||||||||||||| |||  |||||||||||| ||||||| ||| |||  |||||||||||    
T  9016543 taagaacagatactacatttgatcttagccaaaaggtcgaataaggtatgagttaaaagatgaactcgcttatgcttttatat 9016461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19232456 - 19232504
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 49  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19232456 taagaacagatattacacttgatcttagccaaaaggccgagaaaggtat 19232504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 8992198 - 8992116
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    |||||||| |||||||||||||||||||||||||| | |||||||| ||||||| ||||| | ||| |||  |||||||||||    
T  8992198 taagaacatatactacacttgatcttagccaaaagactgagaaaggcatgagttaaaagacgaactcgcttatgcttttatat 8992116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10763935 - 10763978
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaa 44  Q
    |||||||| ||||||||||||||||||| |||||| ||||||||    
T  10763935 taagaacatatactacacttgatcttagtcaaaagaccgagaaa 10763978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 39814150 - 39814115
Alignment:
Q  13 ctacacttgatcttagccaaaaggccgagaaaggta 48  Q
    |||||||||||| |||||||||||||||||||||||    
T  39814150 ctacacttgatcatagccaaaaggccgagaaaggta 39814115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 8975724 - 8975663
Alignment:
Q  22 atcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    ||||||||||||||||  |||||  ||||||||||||| |||||| |||  |||||||||||    
T  8975724 atcttagccaaaaggcttagaaaaatatgagttgaaagttggactcgcttatgcttttatat 8975663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6471766 - 6471813
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 49  Q
    |||||||| ||||||||||| ||||||||||||||| ||| ||||||||    
T  6471766 taagaacatatactacactt-atcttagccaaaaggtcgaaaaaggtat 6471813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 41841209 - 41841291
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| ||||||||||||    
T  41841209 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggttggcttctgcttttatat 41841291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 44879033 - 44878951
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || ||  ||||||||||||    
T  44879033 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaatgttgggctcgcctctgcttttatat 44878951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 44880888 - 44880970
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || ||  ||||||||||||    
T  44880888 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaatgttgggctcgcctctgcttttatat 44880970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 10944456 - 10944581
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatattagacattttctcagtt 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||  || |||  ||  ||  |||||||||||  ||||| ||||| |||    
T  10944456 taagaacagatactacacttgatcttagccaaaaggtcgagaaaggtatgagttacaacatgagct-cctattgcttttatatctgacatgttctcggtt 10944554  T
Q  101 gctttcttgactgctcgatgtgggact 127  Q
    | |||||||| | ||||||||||||||    
T  10944555 gttttcttgattcctcgatgtgggact 10944581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 40054362 - 40054312
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40054362 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 40054312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37679805 - 37679757
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37679805 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 37679757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 37682107 - 37682057
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37682107 taagaacagatactacacttgatcttagccaaaaggccgagaaatgtatga 37682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 42872514 - 42872564
Alignment:
Q  8 agatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 58  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42872514 agatactacacttaatcttagccaaaaggccgagaaaggtatgagttgaaa 42872564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 42220909 - 42220960
Alignment:
Q  8 agatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 59  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||||||    
T  42220909 agatactacacttgatcttagccaaaagaccgaaaaatgtatgagttgaaag 42220960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 42555144 - 42555198
Alignment:
Q  5 aacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 59  Q
    ||||||| || ||||||||||||||||||||  | ||||||||||||||||||||    
T  42555144 aacagattctgcacttgatcttagccaaaagatcaagaaaggtatgagttgaaag 42555198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 44582903 - 44582870
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  44582903 taagaacagatactacacttgatcttagccaaaa 44582870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 10795947 - 10796029
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  || ||| ||||||||||||    
T  10795947 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatat 10796029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 10791709 - 10791768
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaaga 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10791709 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaaga 10791768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30521292 - 30521242
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 51  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  30521292 taagaacagatactacacttgatctcagccaaaaggtcgagaaaggtatga 30521242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8875739 - 8875691
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 49  Q
    |||||||||||| |||||||||||||||||||||||||| |||| ||||    
T  8875739 taagaacagatattacacttgatcttagccaaaaggccgggaaatgtat 8875691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 50077256 - 50077338
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  || ||| ||||||||||||    
T  50077256 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagaagagctggcttctgcttttatat 50077338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 11652449 - 11652511
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgg 63  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11652449 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgg 11652511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 49106586 - 49106644
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49106586 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaag 49106644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 49108690 - 49108772
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || ||| ||| ||||||||    
T  49108690 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaatataggctggcttctgattttatat 49108772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3461199 - 3461258
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaaga 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3461199 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgaattgaaaga 3461258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26984724 - 26984773
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26984724 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 26984773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 26998797 - 26998846
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26998797 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 26998846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 48205881 - 48205832
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 50  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  48205881 taagaacagatactacacttaatcttagctaaaaggccgagaaaggtatg 48205832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 26982588 - 26982549
Alignment:
Q  5 aacagatactacacttgatcttagccaaaaggccgagaaa 44  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  26982588 aacagatgctacacttgatcttagccaagaggccgagaaa 26982549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Original strand, 23267684 - 23267716
Alignment:
Q  151 gccaacaaagagcagttaccaagcagaggatat 183  Q
    |||||||||||||| ||||||||||||||||||    
T  23267684 gccaacaaagagcaattaccaagcagaggatat 23267716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 34481155 - 34481191
Alignment:
Q  10 atactacacttgatcttagccaaaaggccgagaaagg 46  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  34481155 atactacactcgatcttagccaaaaggctgagaaagg 34481191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 1716509 - 1716591
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggactagctgctgcttttatat 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||| ||  ||||||||    
T  1716509 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaaagatgcactcgcttcttattttatat 1716591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7525018 - 7524961
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7525018 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgacttgaaa 7524961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 3643690 - 3643640
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643690 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 3643640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4103295 - 4103249
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggt 47  Q
    ||||||||||||||||||||||||||| |||||| || |||||||||    
T  4103295 taagaacagatactacacttgatcttaaccaaaatgctgagaaaggt 4103249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 15758562 - 15758608
Alignment:
Q  3 agaacagatactacacttgatcttagccaaaaggccgagaaaggtat 49  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||    
T  15758562 agaacagatattacacttgatcttagccaaaaggctgagaaaggtat 15758608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27134561 - 27134511
Alignment:
Q  1 taagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 51  Q
    ||||||||||||||| | ||||||||||  |||||||||| ||||||||||    
T  27134561 taagaacagatactagatttgatcttagtgaaaaggccgaaaaaggtatga 27134511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University