View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18273_low_25 (Length: 258)
Name: NF18273_low_25
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18273_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 4650143 - 4650382
Alignment:
| Q |
1 |
tcaccagtgttggttccaagaatatcactccattggtctccactgtttccaataattctccatccttcttcttcaagcttctttctctcagatgatttgt |
100 |
Q |
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| T |
4650143 |
tcaccagtgttggttccaagaatatcactccattggtctccactgtttccaataattctccatccttcttcttcaagcttctttctctcagatgatttgt |
4650242 |
T |
|
| Q |
101 |
attgaactgcagttttaccatgatataattctgtatccctgcaaccataaatttgaaattaatacaattttttatttatgtgccaacaaaacgtacgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650243 |
attgaactgcagttttaccatgatataattctgtatccctgcaaccataaatttgaaattaatacaattttttatttatgtgccaacaaaacgtacgtgt |
4650342 |
T |
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| Q |
201 |
taataattgacatgcccctcacacatcacctaatatgtcc |
240 |
Q |
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| T |
4650343 |
taataattgacatgcccctcacacatcacctaatatgtcc |
4650382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 23682113 - 23681988
Alignment:
| Q |
1 |
tcaccagtgttggttccaagaatatcactccattggtctccactgtttccaataattctccatccttcttcttcaagcttctttctctcagatgatttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23682113 |
tcaccagtgttggttccaagaatatcactccattggtctccactatttccaataattctccatccttcttcttcaagcttctttctctcagatgatttgt |
23682014 |
T |
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| Q |
101 |
attgaactgcagttttaccatgatat |
126 |
Q |
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|||||| ||| |||||||||||||| |
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| T |
23682013 |
attgaaatgctattttaccatgatat |
23681988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 4645849 - 4645975
Alignment:
| Q |
1 |
tcaccagtgttggttccaagaatatcactccattggtctccactgtttccaataattctccatccttcttcttcaagcttctttctctcagatgatttgt |
100 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||| ||||||||| |||||| |||||||||| || | |||||||||||||||||||||| |
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| T |
4645849 |
tcaccagtattggttccaagaatatcactccattgatctccaatgtttccaacaattctgtatccttcttcctccaatttctttctctcagatgatttgt |
4645948 |
T |
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| Q |
101 |
attgaactgcagttttaccatgatata |
127 |
Q |
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|| |||||| |||||||||||||||| |
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| T |
4645949 |
atgtaactgctgttttaccatgatata |
4645975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 41872254 - 41872375
Alignment:
| Q |
34 |
tggtctccactgtttccaataattctccatccttcttcttcaagcttctttctctcagatgatttgtattgaactgcagttttaccatgatataattctg |
133 |
Q |
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|||||||| |||||||||| ||| | |||||||||| || |||||||||||||| || ||||||||| |||||| |||||||||||||||| | || |
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| T |
41872254 |
tggtctcctatgtttccaatgattttgtatccttcttcctccagcttctttctctctgacgatttgtatgtaactgctgttttaccatgatatattgatg |
41872353 |
T |
|
| Q |
134 |
tatccctgcaaccataaatttg |
155 |
Q |
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|||||||| |||| ||||||| |
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| T |
41872354 |
tatccctgagaccacaaatttg |
41872375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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