View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18273_low_26 (Length: 256)
Name: NF18273_low_26
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18273_low_26 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 40403451 - 40403208
Alignment:
| Q |
13 |
agcataggtgtgagtcacacaaattagccaaaaatataattgtaattataccatgtacccatatttcaagtgcagtccttttaagtttgcgacttcaaac |
112 |
Q |
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| T |
40403451 |
agcataggtgtgagtcacacaaattagccaaaaatataattgtaattatactatgtacccatatttcaagtgccgtccttttaagtttgcgacttcaaac |
40403352 |
T |
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| Q |
113 |
aaagctgatctccatgctttcagcttctcagagtcctttccaaatttttcttcatgttcatccatagctttttcgtaactatttttcagatgtcttatgt |
212 |
Q |
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| T |
40403351 |
aaagctgatctccatgctttcagcttctcagagtcctttccaaatttttcttcatgttcatccatagctttttcgtaactatttttcagatgtcttatgg |
40403252 |
T |
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| Q |
213 |
ttgttggttccactttgtaaaaaataggccaaacaagttggttt |
256 |
Q |
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| T |
40403251 |
ttgttggttccattttgtaaaaaataggccaaacaagttggttt |
40403208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 39619548 - 39619444
Alignment:
| Q |
105 |
cttcaaacaaagctgatctccatgctttcagcttctcagagtcctttccaaatttttcttcatgttcatccatagctttttcgtaactatttttcagatg |
204 |
Q |
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| T |
39619548 |
cttcagacaatgctgttatccatgcttttacattttcagagtcttttccaaacttaacctcatgatcaaccatggctttctcgtaactatttttctgatg |
39619449 |
T |
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| Q |
205 |
tctta |
209 |
Q |
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| T |
39619448 |
tctta |
39619444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 246
Target Start/End: Original strand, 40256675 - 40256826
Alignment:
| Q |
95 |
aagtttgcgacttcaaacaaagctgatctccatgctttcagcttctcagagtcctttccaaatttttcttcatgttcatccatagctttttcgtaactat |
194 |
Q |
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| T |
40256675 |
aagttggcaacttgaaacaaagctgatctccatttttgtatcttctcataatcatttccaaaattattttcatgttcagtcattgctttaccataactat |
40256774 |
T |
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| Q |
195 |
ttttcagatgtcttatgtttgttggttccactttgtaaaaaataggccaaac |
246 |
Q |
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| T |
40256775 |
tcttctgataccttacatctgatggctccactttgtaaaaaattggccaaac |
40256826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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