View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18273_low_28 (Length: 241)
Name: NF18273_low_28
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18273_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 17808291 - 17808504
Alignment:
| Q |
12 |
atcatcaatactgccgaggcgaacaagtttacagtggcccaactcatccaaggtaatgtttggttgaagaacaccggagtggccttcattgcaggcctgt |
111 |
Q |
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| T |
17808291 |
atcatcaatactgccgaggcgaacaagtttacagtggcccaactcatccaaggtaatgtttggttgaagaacactggagtggccttcatcgcaggcctgt |
17808390 |
T |
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| Q |
112 |
agaaatcggctttggcaagcgtctactgatatgtttccgacgctttgcagaaaataaaatgcaaaaattatgctttatggcagaatattacaaatcttct |
211 |
Q |
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| T |
17808391 |
agaaatcggctttggcaagcgtctactgatatgtttccgacgctttgcagaaaataaaatgcaaaaattatgctttatggcagaatattacaaatcttct |
17808490 |
T |
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| Q |
212 |
actggagttgtaat |
225 |
Q |
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| T |
17808491 |
attggagttgtaat |
17808504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 17777611 - 17777793
Alignment:
| Q |
22 |
ctgccgaggcgaacaagtttacagtggcccaactcatccaaggtaatgtttggttgaagaacaccggagtggccttcattgcaggcctgtagaaatcggc |
121 |
Q |
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| T |
17777611 |
ctgcagaggcaagcaagtttacagtaacacagctcatccaaggaaatgtttggttgaagaacacaggggtggccttcattgaaggcctgtagaaatgccc |
17777710 |
T |
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| Q |
122 |
tttggcaagcgtctactgatatgtttccgacgctttgcagaaaataaaatgcaaaaattatgctttatggcagaatattacaa |
204 |
Q |
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| T |
17777711 |
tctaacaaccgtgtaccgatatgtttcagacgttttgcaggaaataaaacagaaaaattatgctttatggcaggatattacaa |
17777793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 17822208 - 17822283
Alignment:
| Q |
22 |
ctgccgaggcgaacaagtttacagtggcccaactcatccaaggtaatgtttggttgaagaacaccggagtggcctt |
97 |
Q |
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| T |
17822208 |
ctgcagaggctagcaagtttacggtagcacaactaatccaaggtaatgtttggttgaagaacacaggggtggcctt |
17822283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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