View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18273_low_3 (Length: 599)
Name: NF18273_low_3
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18273_low_3 |
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| [»] scaffold2079 (2 HSPs) |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: scaffold2079 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 873 - 643
Alignment:
| Q |
1 |
ttggccaaataattctccaacttcgttcaatctagaaaagggttgaataaataaaatattagaaggaacagagtaagttaatgtttgagtagtgattgaa |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
873 |
ttggccaaataattctccaacttcattcaatctagaaa-gggttgaataaataaaatattagaagaaacagagtaagttaatgtttgagtagtgattgaa |
775 |
T |
|
| Q |
101 |
aattgaagttatttaccttgttgaatctgatgaagttgaagttgcatttggaattgtagctcctaatacttccattgttcttcaaactaaacttttg--- |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| |
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| T |
774 |
aattgaagttatttaccttgttgaatctgatgaagttgaagttgcatttggaattgtagctcctaattctgccattgttcttcaaactcaacttttgatg |
675 |
T |
|
| Q |
198 |
atgagtacaacacgttcttcaatattgctttt |
229 |
Q |
| |
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||||||||||||| |||||||||||||||||| |
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| T |
674 |
atgagtacaacacattcttcaatattgctttt |
643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 272 - 515
Target Start/End: Complemental strand, 612 - 372
Alignment:
| Q |
272 |
aagaaaaaacatggaaaaagaggtttgacacaatttggaa-agacagtgacccataaaaacgtttaatacgaattcgttttatactatagttctcgattg |
370 |
Q |
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|||||||||||||||||| ||| | ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
612 |
aagaaaaaacatggaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacgtttaatacgaattcgttttatactata---ctcgattg |
516 |
T |
|
| Q |
371 |
agaaacttcacgaccaaagagtaaacaagattgaaccggtcccaccaaatagatttccatttattccttcatttttatatt--tagtttttgtctttaat |
468 |
Q |
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| T |
515 |
a--actttcttgtccaacgagcaaaaacaattgaacctgtcccaccaaatagatt-ccatttattccttcatttttatattgttagtttttgtctttaat |
419 |
T |
|
| Q |
469 |
cttgtaaatgtttgacatttttccaacttgtgcatttgagcaaagtc |
515 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
418 |
cttttaaatgtttgacatttttccaacttgtgcatttgagcatagtc |
372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 1e-61; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 312 - 523
Target Start/End: Complemental strand, 6242388 - 6242177
Alignment:
| Q |
312 |
agacagtgacccat-aaaaacgtttaatacgaattcgttttatactatagttctcgattgagaaacttcacgaccaaagagtaaacaagattgaaccggt |
410 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||| | |||| ||| ||| || |||||||| || |
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| T |
6242388 |
agacagtgacccattaaaaacgtttaatacgaattcgttttatactatagttctcgattga--aatttcttgtccaacgagcaaagaaaattgaacctgt |
6242291 |
T |
|
| Q |
411 |
cccaccaaatagatttccatttattccttcatttttatatt--tagtttttgtctttaatcttgtaaatgtttgacatttttccaacttgtgcatttgag |
508 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||||||| |
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| T |
6242290 |
cccaccaaatagatt-ccatttattccttcatttttatattgttagtttttgtctttaatcttttaaatgtttgacattttttcaacttgttcatttgag |
6242192 |
T |
|
| Q |
509 |
caaagtcacacaatt |
523 |
Q |
| |
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|| ||||||| |||| |
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| T |
6242191 |
catagtcacataatt |
6242177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 97 - 361
Target Start/End: Original strand, 6333713 - 6333977
Alignment:
| Q |
97 |
tgaaaattgaagttatttaccttgttgaatctgatgaagttgaagttgcatttggaatt------gtagctcctaatacttccattgttcttcaaactaa |
190 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||| |
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| T |
6333713 |
tgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgcatttggaattgtaattgtagctcctaattcagccattgttcttcaaactaa |
6333812 |
T |
|
| Q |
191 |
acttttgatgagtacaacacgttcttcaatattgcttttcttatataatagttg-gtgtttggaatagacttttctccttgaaagaaaaaacatggaaaa |
289 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| || || | || ||| | | ||||||||||| |||||| |
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| T |
6333813 |
acttttgatgagtacaacacattcttcaatattgcttttcttatataatagttgagttttggaaaaagagatat-------gaagaaaaaacagggaaaa |
6333905 |
T |
|
| Q |
290 |
agaggtttgacacaatttgga-aagacagtgacccataaaaacgtttaatacgaattcgttttatactatagt |
361 |
Q |
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|||||| |||||||||||||| ||| |||||||||| |||||||||||||||| ||||||||||| ||||| |
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| T |
6333906 |
agaggtatgacacaatttggatgagaaagtgacccatttaaacgtttaatacgaa-tcgttttatacgatagt |
6333977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 67 - 371
Target Start/End: Original strand, 6326203 - 6326500
Alignment:
| Q |
67 |
aacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaatctga------tgaagttgaagttgcatttggaattgtagc |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| |
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| T |
6326203 |
aacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgaagttgcatttgcaattgtagc |
6326302 |
T |
|
| Q |
161 |
tcctaatacttccattgttcttcaaactaaacttttgatgagtacaacacgttcttcaatattgcttttcttatataatagttggtgtttggaatagact |
260 |
Q |
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| ||||| | ||||||||| | ||||| ||||||||||||||||||| |||||||||||||||||||||||| || ||||| |||||||||| |
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| T |
6326303 |
ttctaattcagccattgttcgttaaact---cttttgatgagtacaacacattcttcaatattgcttttcttatagaagagttgagttttggaatag--- |
6326396 |
T |
|
| Q |
261 |
tttctccttgaaagaaaaaacatggaaaaagaggtttgacacaatttggaaa------gacagtgacccataaaaacgtttaatacgaattcgttttata |
354 |
Q |
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|
||||||| ||||||||||||||| |||||||| |||||||| || |||||||||| |||||||||||||||| |||||||||| |
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| T |
6326397 |
-----------aagaaaagacatggaaaaagaggcttgacacactttggaaagatagtgaaagtgacccat-taaacgtttaatacgaa-tcgttttata |
6326483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 80 - 229
Target Start/End: Complemental strand, 6242582 - 6242427
Alignment:
| Q |
80 |
aatgtttgagtagtgattgaaaattgaagttatttaccttgttgaatctgatgaagttgaagtt------gcatttggaattgtagctcctaatacttcc |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||||||||||||||||||||| || || |
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| T |
6242582 |
aatgtttgagtagtgattgaaaattgaagttatttaccttattgaatccgatgaagttcaagttcaagttgcatttggaattgtagctcctaattctgcc |
6242483 |
T |
|
| Q |
174 |
attgttcttcaaactaaacttttgatgagtacaacacgttcttcaatattgctttt |
229 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
6242482 |
gttgttcttcaaacttaacttttgataagtacaacacattcttcaatattgctttt |
6242427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 6220986 - 6220902
Alignment:
| Q |
172 |
ccattgttcttcaaactaaacttttgatgagtacaacacgttcttcaatattgcttttcttatataatagttggtgtttggaata |
256 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||| ||||||||||||||| ||||||||||| |
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|
| T |
6220986 |
ccattgttcttcaaactcaacttttgatgagtacaacacatgcttcaatattggtttacttatataatagttgatgtttggaata |
6220902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 6242647 - 6242597
Alignment:
| Q |
1 |
ttggccaaataattctccaacttcgttcaatctagaaaagggttgaataaat |
52 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||| ||| |
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|
| T |
6242647 |
ttggccaaataattctccaacttcattcaatctag-aaagggttgaatgaat |
6242597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 6330641 - 6330679
Alignment:
| Q |
316 |
agtgacccataaaaacgtttaatacgaattcgttttatac |
355 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
6330641 |
agtgacccataaaa-cgtttaatacgaattcgttttatac |
6330679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 355
Target Start/End: Original strand, 6347119 - 6347157
Alignment:
| Q |
316 |
agtgacccataaaaacgtttaatacgaattcgttttatac |
355 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6347119 |
agtgacccataaaa-cgtttaatacgaattcgttttatac |
6347157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 316 - 357
Target Start/End: Complemental strand, 161 - 121
Alignment:
| Q |
316 |
agtgacccataaaaacgtttaatacgaattcgttttatacta |
357 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
161 |
agtgacccataaaa-cgtttaatacgaattcgttttatacta |
121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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