View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18273_low_33 (Length: 227)
Name: NF18273_low_33
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18273_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 4650570 - 4650790
Alignment:
| Q |
2 |
atcatgacattgaatatactctattgtaaatatagaaggttatgactcataattccaattactttctcctatgaacaattaattaatgttagaaaactta |
101 |
Q |
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| T |
4650570 |
atcatgacattgaatatactctattgtaaatatagaaggttatgactcataattccaattactttctcctatgaacaattaattaatgttagaaaactta |
4650669 |
T |
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| Q |
102 |
cttcaaaattagcttttcatatgtgtggtagccagcttctttcaagttcttagctgtaatgtccttctgtttgagtggtcttcctgttaagaatgcaatc |
201 |
Q |
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| T |
4650670 |
cttcaaaattagcttttcatatgtgtggtagccagcttctttcaagttcttagctgtaatgtccttctgtttgagtggtcttcctgttaagaatgcaatc |
4650769 |
T |
|
| Q |
202 |
ttaacaccaagatttaccagt |
222 |
Q |
| |
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||||||||||||||||||||| |
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| T |
4650770 |
ttaacaccaagatttaccagt |
4650790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 23680759 - 23680683
Alignment:
| Q |
82 |
aattaatgttagaaaacttacttcaaaattagcttttcatatgtgtggtagccagcttctttcaagttcttagctgt |
158 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23680759 |
aattaatgttagaaaacttacttcaaaattagcttttcatatgtgtggtagccagcttgtttcaagttcttagctgt |
23680683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 4646346 - 4646416
Alignment:
| Q |
143 |
tcaagttcttagctgtaatgtccttctgtttgagtggtcttcctgttaagaatgcaatcttaacaccaaga |
213 |
Q |
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| T |
4646346 |
tcaagttcttagctgtaatttctttctgtttgagtggtctgcctgttaagaacgcaatcttgataccaaga |
4646416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 23679594 - 23679524
Alignment:
| Q |
152 |
tagctgtaatgtccttctgtttgagtggtcttcctgttaagaatgcaatcttaacaccaagatttaccagt |
222 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| |
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| T |
23679594 |
tagccgtaatgtccttctgtttgagtggtcttcctgttaagaacacaaatttgacaccaagatttaccagt |
23679524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 91 - 213
Target Start/End: Original strand, 41872538 - 41872660
Alignment:
| Q |
91 |
tagaaaacttacttcaaaattagcttttcatatgtgtggtagccagcttctttcaagttcttagctgtaatgtccttctgtttgagtggtcttcctgtta |
190 |
Q |
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|||||||||||||| ||||||| ||||| ||| ||||||||||| | |||| ||||| ||||| |||| |||||||||| || |||||| |||| |
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| T |
41872538 |
tagaaaacttacttgcaaattagtttttcccgtgtatggtagccagcaagtctcaaattcttggctgttatgttcttctgtttgtttgctcttccagtta |
41872637 |
T |
|
| Q |
191 |
agaatgcaatcttaacaccaaga |
213 |
Q |
| |
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||||| ||||||| | ||||||| |
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| T |
41872638 |
agaatacaatcttgataccaaga |
41872660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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