View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18273_low_8 (Length: 426)
Name: NF18273_low_8
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18273_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 416
Target Start/End: Complemental strand, 53426817 - 53426418
Alignment:
| Q |
17 |
ataaaccaattcaagtttgagaaagaaaaaactcacagaaaactgataatacagccatgctgagtatgctgaaagttcttgacaatgcactaagaaatag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53426817 |
ataaaccaattcaagtttgagaaagaaaaaactcacagaaagctgataatacagccatgctgagtatgctgaaagttcttgacaatgcactaagaaatag |
53426718 |
T |
|
| Q |
117 |
gaaccagtggcagtgatggagactgctattcatatcagaattggaactgagataattaagtttttgataagcacaatatatgtagatgtatgctgcattc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
53426717 |
gaaccagtggcagtgatggagactgctattcatatcagaattggaactgagataattaagtttttgataagcacaatatatgtagatgtatgttgcattc |
53426618 |
T |
|
| Q |
217 |
ttcttaatgtaatgaggaggatatatcatgtgaaattgatattgaaatgccaattgaaggtggcagtgttggcgtggcggttatttcaaaatatgattat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53426617 |
ttcttaatgtaatgaggaggatatatcatgtgaaattgatattgaaatgccaattgaaggtggcagtgttggcgtggcggttatttcaaaatatgattat |
53426518 |
T |
|
| Q |
317 |
gactaaggataacttattcagagagaagtactaaatgatgcataaacagaatgctcttatgggtgtggtctgagagaaagtgcttcaatattttcttcga |
416 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53426517 |
gactaaggataatttattcagagagaagtactaaatgatgcataaacagaatgctcttatgggtgtggtctgagagaaagtgcttcaatattttcttcga |
53426418 |
T |
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