View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18273_low_9 (Length: 408)

Name: NF18273_low_9
Description: NF18273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18273_low_9
NF18273_low_9
[»] chr5 (2 HSPs)
chr5 (16-356)||(3280238-3280578)
chr5 (125-187)||(6126873-6126935)
[»] chr1 (2 HSPs)
chr1 (125-234)||(17556755-17556864)
chr1 (125-187)||(26471084-26471146)
[»] chr8 (4 HSPs)
chr8 (150-189)||(3236383-3236422)
chr8 (125-187)||(32211382-32211444)
chr8 (125-190)||(8587216-8587281)
chr8 (125-173)||(7012234-7012282)
[»] chr7 (4 HSPs)
chr7 (125-187)||(4790297-4790359)
chr7 (125-173)||(9575472-9575520)
chr7 (142-190)||(18102936-18102984)
chr7 (125-173)||(28536770-28536818)
[»] chr6 (2 HSPs)
chr6 (125-187)||(35031020-35031082)
chr6 (144-188)||(9220600-9220644)
[»] chr4 (4 HSPs)
chr4 (125-187)||(41615695-41615757)
chr4 (125-226)||(41594665-41594765)
chr4 (149-217)||(43541890-43541956)
chr4 (122-190)||(51531517-51531585)
[»] chr3 (2 HSPs)
chr3 (125-187)||(33942951-33943013)
chr3 (125-187)||(51406722-51406784)
[»] chr2 (4 HSPs)
chr2 (125-187)||(13344533-13344595)
chr2 (142-188)||(41526301-41526347)
chr2 (148-176)||(10061625-10061653)
chr2 (125-173)||(41492915-41492963)


Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 3280578 - 3280238
Alignment:
Q  16 atcattaaaattagtaagtgctgcccctttacttatactagtaatttacactgacacacaattgtgaattttattgcatacattcaagatagtttctccc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3280578 atcattaaaattagtaagtgctgcccctttacttatactagtaatttacactgacacacaattgtgaattttattgcatacattcaagatagtttctccc 3280479  T
Q  116 ccttagatatataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatttagaccaagtacatcaaaattttattgatccaactttaactt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||    
T  3280478 ccttagatatataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatttagaccaagtacatgagaattttattgatccaaatttaactt 3280379  T
Q  216 atatatgggacaagagggattaggaagttatgccgtactaaattactaataaatagttttctagctttttcccacgaaataaaagaattacttttaactt 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3280378 atatatgggacaagagggattaggaagttatgccgtactaaattactaataaatagttttctagctttttcccacgaaataaaagaattactttgaactt 3280279  T
Q  316 gattcaatcaataatcatgtcggtgttggttgagtgatacg 356  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  3280278 gattcaatcaataatcatgtcggtgttagttgagtgatacg 3280238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 6126935 - 6126873
Alignment:
Q  125 tataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatttagaccaagtacat 187  Q
    ||||||||||  |||| ||||  ||| ||||||||||||||||||||||||| |||| |||||    
T  6126935 tataagagaattttgggtcaacaaaagttgatgtatctagttaaaaatttagtccaaatacat 6126873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 234
Target Start/End: Complemental strand, 17556864 - 17556755
Alignment:
Q  125 tataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatttagaccaagtacatcaaaattttattgatccaactttaacttatatatggg 224  Q
    ||||||||||| |||| ||||  ||| |||||||||||||||||||||| || |||| |||||  || |||| |||| | ||||||  |||||| || ||    
T  17556864 tataagagaaacttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacatttaacttttgttgacctaactttctcttataaatagg 17556765  T
Q  225 acaagaggga 234  Q
    || |||||||    
T  17556764 accagaggga 17556755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 26471084 - 26471146
Alignment:
Q  125 tataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatttagaccaagtacat 187  Q
    ||||||||||  |||||||||  ||| |||||||||||||||||||||| || |||| |||||    
T  26471084 tataagagaattttggatcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 26471146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 189
Target Start/End: Original strand, 3236383 - 3236422
Alignment:
Q  150 aattgatgtatctagttaaaaatttagaccaagtacatca 189  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  3236383 aattgatgtatctagtttaaaatttagaccaaatacatca 3236422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 32211382 - 32211444
Alignment:
Q  125 tataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatttagaccaagtacat 187  Q
    ||||||||||  |||| ||||  |||||||||||||||||||||||||| || |||| |||||    
T  32211382 tataagagaattttgggtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacat 32211444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 8587281 - 8587216
Alignment:
Q  125 tataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatttagaccaagtacatcaa 190  Q
    ||||||||||| |||  ||||  ||| ||||||||||||||||||||||||| | || ||||||||    
T  8587281 tataagagaaacttgagtcaataaaagttgatgtatctagttaaaaatttagtcaaaatacatcaa 8587216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 7012282 - 7012234
Alignment:
Q  125 tataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatt 173  Q
    ||||||||||  |||||||||  ||| ||||||||||||||||||||||    
T  7012282 tataagagaattttggatcaacaaaagttgatgtatctagttaaaaatt 7012234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 4790359 - 4790297
Alignment:
Q  125 tataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatttagaccaagtacat 187  Q
    ||||||||||  |||| ||||  ||| ||||||||||||||||||||||||| |||| |||||    
T  4790359 tataagagaattttgggtcaataaaagttgatgtatctagttaaaaatttagtccaaatacat 4790297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 9575520 - 9575472
Alignment:
Q  125 tataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatt 173  Q
    |||||||||||||| | ||||  ||| ||||||||||||||||||||||    
T  9575520 tataagagaaagtttggtcaacaaaacttgatgtatctagttaaaaatt 9575472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 18102936 - 18102984
Alignment:
Q  142 tcaaacaaaattgatgtatctagttaaaaatttagaccaagtacatcaa 190  Q
    ||||||||||| ||||||| |||||||||||||  ||||| ||||||||    
T  18102936 tcaaacaaaatcgatgtatttagttaaaaatttgaaccaaatacatcaa 18102984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 28536770 - 28536818
Alignment:
Q  125 tataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatt 173  Q
    ||||||||||  |||||||||  ||| ||||||||||||||||||||||    
T  28536770 tataagagaattttggatcaataaaagttgatgtatctagttaaaaatt 28536818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 35031020 - 35031082
Alignment:
Q  125 tataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatttagaccaagtacat 187  Q
    ||||||||||  |||| ||||  |||||||||||||||||||||||||| || |||| |||||    
T  35031020 tataagagaattttgggtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacat 35031082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 9220600 - 9220644
Alignment:
Q  144 aaacaaaattgatgtatctagttaaaaatttagaccaagtacatc 188  Q
    ||||||| |||||||||||||||||||| ||| ||||| ||||||    
T  9220600 aaacaaagttgatgtatctagttaaaaagttaaaccaaatacatc 9220644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 41615695 - 41615757
Alignment:
Q  125 tataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatttagaccaagtacat 187  Q
    ||||||||||| |||||||||  ||| ||||||||| |||||||||||| || |||| |||||    
T  41615695 tataagagaaaattggatcaacaaaagttgatgtatttagttaaaaattaagtccaaatacat 41615757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 41594765 - 41594665
Alignment:
Q  125 tataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatttagaccaagtacatcaaaattttattgatccaactttaacttatatatggg 224  Q
    |||||||||||||||| ||||   || ||||||||||| ||| ||||||| |||||  |||||| || |||| |||| ||||||||  ||||||| ||||    
T  41594765 tataagagaaagttgggtcaacttaagttgatgtatctggttcaaaatttggaccatatacatc-aacttttgttgacccaactttctcttatatgtggg 41594667  T
Q  225 ac 226  Q
    ||    
T  41594666 ac 41594665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 43541890 - 43541956
Alignment:
Q  149 aaattgatgtatctagttaaaaatttagaccaagtacatcaaaattttattgatccaactttaacttat 217  Q
    |||||||||||| | ||| ||||||| |||||| ||||||  |||||| |||||||||||||| |||||    
T  43541890 aaattgatgtatttcgtttaaaatttggaccaaatacatc--aattttgttgatccaactttatcttat 43541956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 51531585 - 51531517
Alignment:
Q  122 atatataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatttagaccaagtacatcaa 190  Q
    ||||||||||||||||| ||| ||  |||||  |||||||| ||| ||||||| |||||| ||||||||    
T  51531585 atatataagagaaagtttgattaataaaaatgaatgtatcttgttcaaaatttggaccaaatacatcaa 51531517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 33942951 - 33943013
Alignment:
Q  125 tataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatttagaccaagtacat 187  Q
    ||||||||||| |||| ||||  ||| |||||||||||||||||||||| || |||| |||||    
T  33942951 tataagagaaacttgggtcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 33943013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 51406784 - 51406722
Alignment:
Q  125 tataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatttagaccaagtacat 187  Q
    ||||||||||  |||| ||||  |||||||||||||||||||||||||| || |||| |||||    
T  51406784 tataagagaattttgggtcaacaaaaattgatgtatctagttaaaaattcagtccaaatacat 51406722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 13344595 - 13344533
Alignment:
Q  125 tataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatttagaccaagtacat 187  Q
    ||||||||||  |||||||||  ||| |||||||||||||||||||||| || |||| |||||    
T  13344595 tataagagaattttggatcaacaaaagttgatgtatctagttaaaaattcagtccaaatacat 13344533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 41526347 - 41526301
Alignment:
Q  142 tcaaacaaaattgatgtatctagttaaaaatttagaccaagtacatc 188  Q
    |||||| ||||| ||||||||||||||||||||||| ||| ||||||    
T  41526347 tcaaacgaaattaatgtatctagttaaaaatttagatcaaatacatc 41526301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 176
Target Start/End: Original strand, 10061625 - 10061653
Alignment:
Q  148 aaaattgatgtatctagttaaaaatttag 176  Q
    |||||||||||||||||||||||||||||    
T  10061625 aaaattgatgtatctagttaaaaatttag 10061653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 41492915 - 41492963
Alignment:
Q  125 tataagagaaagttggatcaaacaaaattgatgtatctagttaaaaatt 173  Q
    ||||||||||| |||| ||||  ||| ||||||||||||||||||||||    
T  41492915 tataagagaaatttgggtcaacaaaagttgatgtatctagttaaaaatt 41492963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University