View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18274_low_2 (Length: 271)
Name: NF18274_low_2
Description: NF18274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18274_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 53443896 - 53444127
Alignment:
| Q |
19 |
gccaagagacagcacccattacaggactgacctcagcaacaacgaggccattggatgtgttcttccaagcgggttttttagggttagcgttaaccacatt |
118 |
Q |
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| T |
53443896 |
gccaagagacagcacccattacaggactgacctcagcaacaacgaggccattggatgtgttcttccaagcgggttttttagggttagcgttaaccacatt |
53443995 |
T |
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| Q |
119 |
gttaatcttatcagcattagagttgttgttatctacgacaacaacagaagcagtaatagtagcaaatagattggctgaatcgagagacgatgatgaagaa |
218 |
Q |
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| T |
53443996 |
gttaatcttatcggcattggagttgttgttatctacgacaacaacagcagcagtaatagcagcaactagattggctgaatcgagagacgatgatgaagaa |
53444095 |
T |
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| Q |
219 |
acagaatgtggcggatgattattgagtggttc |
250 |
Q |
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| T |
53444096 |
acggaatgtggcggatgattattgagtggttc |
53444127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 53401307 - 53401408
Alignment:
| Q |
19 |
gccaagagacagcacccattacaggactgacctcagcaacaacgaggccattggatgtgttcttccaagcgggttttttagggttagcgttaaccacatt |
118 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53401307 |
gccaagagacagcacccattacaggattgacctcagcaacaacgaggccattggatgtgttcttccaagcgggttttttagggttagcgttaaccacatt |
53401406 |
T |
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| Q |
119 |
gt |
120 |
Q |
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|| |
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| T |
53401407 |
gt |
53401408 |
T |
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