View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18275_high_4 (Length: 417)
Name: NF18275_high_4
Description: NF18275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18275_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 138
Target Start/End: Original strand, 11453377 - 11453495
Alignment:
| Q |
20 |
taaggttaagattgtgagagaaattagggaaattgtggtgcaagattagagagataaattaagcttttggaatttgcggtaaattaatggtgatgcatag |
119 |
Q |
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| T |
11453377 |
taaggttaagattgtgagagaagttagggaaattgtggtgcaagattagagagataaattaaggttttggaatttgcggtaaattaatggtgatgcatag |
11453476 |
T |
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| Q |
120 |
ggcttgaattggagccaac |
138 |
Q |
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| T |
11453477 |
ggtttgaattggagccaac |
11453495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 187 - 335
Target Start/End: Original strand, 11453682 - 11453819
Alignment:
| Q |
187 |
tgatcggtagacactttcataaaatggattattaatattaatgggataattataaa-gcaacgccaattctaatataaaaactaataacatgttaaatag |
285 |
Q |
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| T |
11453682 |
tgatcggtagatacttctataaaatggattattaatattactgggataattataaaagcaaggctaattctcatataaaagctaataaa----------- |
11453770 |
T |
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| Q |
286 |
tcatgtgttaaatggactatgatctcaacgttatttcatgtaggttccaa |
335 |
Q |
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| T |
11453771 |
-catgtgttaaatggactatgatctcaacgttatttcatgtaggttccaa |
11453819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 330 - 410
Target Start/End: Original strand, 11454081 - 11454162
Alignment:
| Q |
330 |
ttccaacttaaggcannnnnnnaaaaaattaccattaatcatgcaatttgattcaac-cacaaaccatctcaacctatgctt |
410 |
Q |
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| T |
11454081 |
ttccaacttaaggcatttttaaaaaaaattaccattaatcatgcaatttgattcaacacacaaaccatctcaacctatgctt |
11454162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 11381146 - 11381180
Alignment:
| Q |
20 |
taaggttaagattgtgagagaaattagggaaattg |
54 |
Q |
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| T |
11381146 |
taaggttacgattgtgagagaaattagggaaattg |
11381180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 11453547 - 11453603
Alignment:
| Q |
139 |
caattttgtaaaaaattgcaaatcaataaggtatttagttgaccactttgatcggta |
195 |
Q |
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| T |
11453547 |
caattttgtaaaatattgcaaattattaaggcatcgagttgacgactttgatcggta |
11453603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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