View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18275_low_12 (Length: 246)
Name: NF18275_low_12
Description: NF18275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18275_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5951536 - 5951298
Alignment:
| Q |
1 |
acaagaaagtgacatcggtaaattaagaacttggtttaaagtttaatgatactagtaaactcgaaataatatataagtattttttctatctttcaatgtt |
100 |
Q |
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| T |
5951536 |
acaagaaagtgacatcggtaaattaagaacttggtttaaagtttaatgatactagtaaactcgaaataatatataagtattttttctatctttcaatgtt |
5951437 |
T |
|
| Q |
101 |
cagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaatgcctagtaaatgcagcaaggagaccatcagcaa |
200 |
Q |
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| T |
5951436 |
cagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgagagtttattggaaaatgcctagtaaatgcagcaaggagaccatcagcaa |
5951337 |
T |
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| Q |
201 |
aagaactgttgcatgatccatttcttgtgtctgatgatg |
239 |
Q |
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| T |
5951336 |
aagaactgttgcatgatccatttcttgtgtctgatgatg |
5951298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 232
Target Start/End: Complemental strand, 22396679 - 22396537
Alignment:
| Q |
90 |
ctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaatgcctagtaaatgcagcaaggag |
189 |
Q |
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|||| ||||||||| |||||||||||| | ||||| ||| || |||||||| |||| ||| |||||||||| |||||||||||| || |||| || | |
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| T |
22396679 |
cttttaatgttcagtgtaagctaccagaagcacttatcctgatagaagatgccgaagtacgagagtttattgaaaaatgcctagtgaaagcagtaaaaaa |
22396580 |
T |
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| Q |
190 |
accatcagcaaaagaactgttgcatgatccatttcttgtgtct |
232 |
Q |
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| T |
22396579 |
acctttggcaaaataactgctgcatgatccatttcttgtgtct |
22396537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 28153837 - 28153921
Alignment:
| Q |
90 |
ctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaatgcctagt |
174 |
Q |
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|||| |||||||| |||| ||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
28153837 |
cttttaatgttcaaggtatgctaccagcaacacttttctgatttgaagatgcaaaagcattggagtttattggaaaatgcctagt |
28153921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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