View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18275_low_13 (Length: 245)
Name: NF18275_low_13
Description: NF18275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18275_low_13 |
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| [»] chr7 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 11453254 - 11453141
Alignment:
| Q |
132 |
ggcttcaaaggtatttgttctcgcgctcatctttgttgccattgttggcgtcgctatggccgctgaagccccagcttcatcaccaaagtcatcaccaaag |
231 |
Q |
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|||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11453254 |
ggcttctaaggtattcgttctcgcgctcatctttgttgccgttgttggcgtcgctatggccgctgaagccccagcttcatcaccaaagtcatcaccaaag |
11453155 |
T |
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| Q |
232 |
tcatcaacaaagga |
245 |
Q |
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|||||| ||||||| |
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| T |
11453154 |
tcatcagcaaagga |
11453141 |
T |
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Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 11381149 - 11381061
Alignment:
| Q |
1 |
cttataaaacggtattccccactcaaaccaattcaccacattcattcttgttcgtattttctctaatattgttttattagagaaatact |
89 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11381149 |
cttataaaacggcattccccactcaaaccaattcaccacattcattcttgttagtattttctctaatattgttttattagagaaatact |
11381061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 11396527 - 11396439
Alignment:
| Q |
1 |
cttataaaacggtattccccactcaaaccaattcaccacattcattcttgttcgtattttctctaatattgttttattagagaaatact |
89 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11396527 |
cttataaaacggcattccccactcaaaccaattcaccacattcattcttgttagtattttctctaatattgttttattagagaaatact |
11396439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 11404549 - 11404461
Alignment:
| Q |
1 |
cttataaaacggtattccccactcaaaccaattcaccacattcattcttgttcgtattttctctaatattgttttattagagaaatact |
89 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11404549 |
cttataaaacggcattccccactcaaaccaattcaccacattcattcttgttagtattttctctaatattgttttattagagaaatact |
11404461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 11381020 - 11380927
Alignment:
| Q |
132 |
ggcttcaaaggtatttgttctcgcgctcatctttgttgccattgttggcgtcgctatggccgctgaagccccagcttcatcaccaaagtcatca |
225 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11381020 |
ggcttcaaaggtattcgttctcgcgctcatctttgttgtcattgttggcgtggctatggccgctgaagccccagcttcatcaccaaaggcatca |
11380927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 11396398 - 11396305
Alignment:
| Q |
132 |
ggcttcaaaggtatttgttctcgcgctcatctttgttgccattgttggcgtcgctatggccgctgaagccccagcttcatcaccaaagtcatca |
225 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
11396398 |
ggcttcaaaggtattcgttctcgcgctcatctttgttgccattgttggcgtggctatggccgctgaagccccaacttcatcaccaaaggcatca |
11396305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 11404420 - 11404327
Alignment:
| Q |
132 |
ggcttcaaaggtatttgttctcgcgctcatctttgttgccattgttggcgtcgctatggccgctgaagccccagcttcatcaccaaagtcatca |
225 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
11404420 |
ggcttcaaaggtattcgttctcgcgctcatctttgttgccattgttggcgtggctatggccgctgaagccccaacttcatcaccaaaggcatca |
11404327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 11453380 - 11453296
Alignment:
| Q |
1 |
cttataaaacggtattccccactcaaaccaattcaccacattcattcttgttcgtattttctctaatattgttttattagagaaa |
85 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
11453380 |
cttataaaacggtattcactactcaaaccaattcaccacattcattcttgttagtattttctctaatattgtttcattagagaaa |
11453296 |
T |
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