View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18275_low_14 (Length: 239)
Name: NF18275_low_14
Description: NF18275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18275_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 4605940 - 4606132
Alignment:
| Q |
13 |
gaaccgagtgttactcattctacgccattgtattgtatgttgtataatttaaaatatttaacatcatcgctttttagttcaaatatatgagtaatggacc |
112 |
Q |
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| T |
4605940 |
gaaccgagtgttactcattctacgccactgtattgtatgttgtataatttaaaatatttaacattatcgctttttagttcaaatatatgagtaatggacc |
4606039 |
T |
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| Q |
113 |
aaaacttgttagatttaaagagttaatttatccagaaatgaaaattgaatccaagctttacctccaaatccaatgttaactccttcgtccgtc |
205 |
Q |
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| T |
4606040 |
aaaacttgttagatttaaagagttaatttatccagaaatgaaaattgaatccaagctttacctccaaatccaatgttaactccttcgtccgtc |
4606132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 4591959 - 4592105
Alignment:
| Q |
18 |
gagtgttactcattctacgccattgtattgtatgttgtataatttaaaatatttaacatcatcgctttttagt-tcaaatatatgagtaatggaccaaaa |
116 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||| |
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| T |
4591959 |
gagtgttaatcattctaagccattgtattgtatgttgtataatttaaaatatttgacatcttcgctttttagtcccaaatatatgactaatggaccaaaa |
4592058 |
T |
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| Q |
117 |
cttgttagatttaaagagttaatttatccagaaatgaaaattgaatc |
163 |
Q |
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| T |
4592059 |
cttgttagatttaaagagttaatttatgcggagatgaaaattgaatc |
4592105 |
T |
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