View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18275_low_15 (Length: 238)
Name: NF18275_low_15
Description: NF18275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18275_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 227
Target Start/End: Complemental strand, 23215151 - 23214939
Alignment:
| Q |
15 |
attaactgctagtgctgtttcaaatcttagtatttatacctgtctccataactctaccatctcatcaaaacacaattacaaactatcaaactctaacaag |
114 |
Q |
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| T |
23215151 |
attaactgctagggctgtttcaaatcttagtatttatatctgtctccataactctaccatctcatcaaaacacaattacaaactatcaaactctaacaag |
23215052 |
T |
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| Q |
115 |
catggctcgctctgaaactctcgctaccactatgcccctcaaagctataatgtttatggcattgatattccttacattcactttcacaacttcaagtcga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23215051 |
catggctcgctctgaaactctcgctaccactatgcccctcaaagctataatgtttatggcattgatattccttacattcactttcacaacttcaagtcga |
23214952 |
T |
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| Q |
215 |
attctcagtgaac |
227 |
Q |
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||||||||||||| |
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| T |
23214951 |
attctcagtgaac |
23214939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 72 - 227
Target Start/End: Original strand, 23238030 - 23238188
Alignment:
| Q |
72 |
catctcatcaaaacacaattacaaactatcaaactctaacaagcatggctcgctctgaaactctcgctaccactatgcccctcaaagctataatgtttat |
171 |
Q |
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|||||||||||||||||| |||| |||||||| || ||| |||||| |||| ||||||| | |||||||||||| |||||| | || ||| |||| |
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| T |
23238030 |
catctcatcaaaacacaaaatcaaattatcaaaccttagcaaacatggcacgctttgaaactttttttaccactatgcctctcaaatccattatgcttat |
23238129 |
T |
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| Q |
172 |
ggcattga---tattccttacattcactttcacaacttcaagtcgaattctcagtgaac |
227 |
Q |
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|||||||| ||||||||||||| |||| ||||||||||| ||||||||||||||||| |
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| T |
23238130 |
ggcattgatattattccttacattaacttccacaacttcaactcgaattctcagtgaac |
23238188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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