View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18275_low_2 (Length: 470)
Name: NF18275_low_2
Description: NF18275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18275_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 214 - 454
Target Start/End: Original strand, 1196996 - 1197240
Alignment:
| Q |
214 |
aaagaatatttgttctcgtctcatgtaaatatcttacttgcaagctgt---cctgcaactatt-ctttttcgtgcgccaaagcattcattaaggtatgtc |
309 |
Q |
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| T |
1196996 |
aaagaatatttgttctcgtctcatgtaattatcttacttgcaagctgttgtcctgcaactatttctttttcatgcgccaaagcattcattaaggtatgtc |
1197095 |
T |
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| Q |
310 |
attgtcttccatgctccttaatttttaagtcgtgctttgagcaatgaaattctttcataacatattgtgattgtcctatatgacagaagagggaaaggaa |
409 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
1197096 |
attgtcttccatgctccttaaattttaagtcgtgctttaagcaatgaaattctttcatgacatattgtgattgtcctatatgacagaagggggaaaggaa |
1197195 |
T |
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| Q |
410 |
acttgtcttgccatgttttccttttttgtcgaacatgttgcattt |
454 |
Q |
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| T |
1197196 |
acttgtcttgccatgttttccttttttgtcaaacatgttacattt |
1197240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 7 - 214
Target Start/End: Original strand, 1196647 - 1196854
Alignment:
| Q |
7 |
gtgaaaagaagaatgctaatgtttcttgaccaaagattagctatcaaaaaatttaagctcaatgtgaacggttttgtatttaggtacatgtcaaaggatg |
106 |
Q |
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| T |
1196647 |
gtgaagagaagaatgctaatgtttcgtgaccaaagtttgcctatcaaagaatttaagatcgatttaaacggttttgtacctaagtacatgtcaaaggatg |
1196746 |
T |
|
| Q |
107 |
ctgatatttggttgaaattggcttgtgaatgtggtgttgaggtaatacagtattcccaatgggttaatcaagaccaatactattatcatgcgttgccaag |
206 |
Q |
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| T |
1196747 |
ttgatatttggttgaaattggcttgtgaatgtggtgttgaggtaatagagtattcccaatgggttaatcaagaccaatactattatcatgcgttgccaag |
1196846 |
T |
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| Q |
207 |
gtgggtca |
214 |
Q |
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||| |||| |
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| T |
1196847 |
gtgtgtca |
1196854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 7 - 165
Target Start/End: Original strand, 1180305 - 1180463
Alignment:
| Q |
7 |
gtgaaaagaagaatgctaatgtttcttgaccaaagattagctatcaaaaaatttaagctcaatgtgaacggttttgtatttaggtacatgtcaaaggatg |
106 |
Q |
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||||| ||||||||||||||||||| ||||||||| || |||||||||||||||| ||||||| |||| ||||||||| ||||||||||||||||||||| |
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| T |
1180305 |
gtgaagagaagaatgctaatgtttcgtgaccaaagtttggctatcaaaaaatttaggctcaatttgaatggttttgtagttaggtacatgtcaaaggatg |
1180404 |
T |
|
| Q |
107 |
ctgatatttggttgaaattggcttgtgaatgtggtgttgaggtaatacagtattcccaa |
165 |
Q |
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| T |
1180405 |
ttgataattggttgaaattggcttgtgaatgtggtgttgaggtaatacagtattcccaa |
1180463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 272 - 454
Target Start/End: Original strand, 1186577 - 1186757
Alignment:
| Q |
272 |
ttctttttcgtgcgccaaagcattcattaaggtatgtcattgtcttccatgctccttaatttttaagtcgtgctttgagcaatgaaattctttcataaca |
371 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||| || | ||||||||||||||||||||||| ||||||||| ||||| |
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| T |
1186577 |
ttctttttcgtacgccaaagcattcattgaggtatgtcattgtcttccatgctctttcaattttaagtcgtgctttgagcaattaaattctttaataact |
1186676 |
T |
|
| Q |
372 |
tattgtgattgtcctatatgacagaagagggaaaggaaacttgtcttgccatgttttccttttttgtcgaacatgttgcattt |
454 |
Q |
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||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| ||||||| |||| || | ||||||||| |
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| T |
1186677 |
tattgtgattgtcctatatgacaga--aggaaaacaaaacttgtcttgccatgttctccttttatgtcaaaaacgttgcattt |
1186757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 287 - 375
Target Start/End: Original strand, 1192334 - 1192419
Alignment:
| Q |
287 |
caaagcattcattaaggtatgtcattgtcttccatgctccttaatttttaagtcgtgctttgagcaatgaaattctttcataacatatt |
375 |
Q |
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| T |
1192334 |
caaaccattcattgaggtatgtcattgtctcccatgctc---aaattttaagttgtgctttgagcaatgaaattctttaataacatatt |
1192419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 1185682 - 1185747
Alignment:
| Q |
7 |
gtgaaaagaagaatgctaatgtttcttgaccaaagattagctatcaaaaaatttaagctcaatgtg |
72 |
Q |
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| T |
1185682 |
gtgaaaaggagaatgctaaaatttcgtgatcaaagcttgactatcaaagaatttaagctcaatgtg |
1185747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 171
Target Start/End: Original strand, 1185801 - 1185834
Alignment:
| Q |
138 |
tggtgttgaggtaatacagtattcccaatgggtt |
171 |
Q |
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| T |
1185801 |
tggtgttgaggtaatagagtattcccaatgggtt |
1185834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 398
Target Start/End: Original strand, 5175539 - 5175649
Alignment:
| Q |
288 |
aaagcattcattaaggtatgtcattgtcttccatgctccttaatttttaagtcgtgctttgagcaatgaaattctttcataacatattgtgattgtccta |
387 |
Q |
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|||||||||||| |||||||||||| ||| || ||||| | ||| |||| |||||| |||| |||||||||| |||| ||||||||||||| ||| |
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| T |
5175539 |
aaagcattcattcaggtatgtcattctctattgtgttcctttaatttcaagttgtgcttcaagcagtgaaattcttacatattatattgtgattgtacta |
5175638 |
T |
|
| Q |
388 |
tatgacagaag |
398 |
Q |
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||| ||||||| |
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| T |
5175639 |
tataacagaag |
5175649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 398
Target Start/End: Original strand, 5204690 - 5204802
Alignment:
| Q |
286 |
ccaaagcattcattaaggtatgtcattgtcttccatgctccttaatttttaagtcgtgctttgagcaatgaaattctttcataacatattgtgattgtcc |
385 |
Q |
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||||||||||||| |||||||||||| ||| ||||| || || | ||| |||| ||||||| ||| ||||| ||| |||| ||||||||||||| | |
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| T |
5204690 |
ccaaagcattcatagaggtatgtcattctctcccatgttcttttaatttcaagttgtgctttcagccgtgaaacccttacatattatattgtgattgtac |
5204789 |
T |
|
| Q |
386 |
tatatgacagaag |
398 |
Q |
| |
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|| |||||||||| |
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| T |
5204790 |
tacatgacagaag |
5204802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 379
Target Start/End: Original strand, 5194408 - 5194499
Alignment:
| Q |
288 |
aaagcattcattaaggtatgtcattgtcttccatgctccttaatttttaagtcgtgctttgagcaatgaaattctttcataacatattgtga |
379 |
Q |
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| T |
5194408 |
aaagcgttcattgaggtatgtcattctctcccatgttcctttaatttcaagttgtgcttccagcagtgaaattcttacatattatattgtga |
5194499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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