View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18275_low_3 (Length: 445)
Name: NF18275_low_3
Description: NF18275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18275_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Original strand, 35370451 - 35370872
Alignment:
| Q |
17 |
agaagctcttctcatactttccccaattgaagtatctctcttacacaccatcgtaagtttacaatgtt-aatattgtaatgaaattcataacttctacaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
35370451 |
agaagctcttctcatactttccccaattgaagtatctctcttacacaccatcgtaagtttacaatgtttaatattgtaatgaaattcataacttctacaa |
35370550 |
T |
|
| Q |
116 |
tcaaagtccatatactaatttattttcttcttggtttccataggtttcactcattacatcacactaaattcaggagaaattactcactttttatgccaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35370551 |
tcaaagtccatatactaatttattttcttcttggtttccataggtttcactcattacatcacactaaattcaggagaaattactcactttttatgccaat |
35370650 |
T |
|
| Q |
216 |
gtatgactacatttatggtacggtagataaatccacagatgttatatatgaaacctcattgataagaccaaaggagtcaccagatgtggtccacttaaca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
35370651 |
gtatgactacatttatggtacggtagataaatccacagatgttatatatgaaacctcattgatgagaccaaaggagtcaccagatgtggtccacttaaca |
35370750 |
T |
|
| Q |
316 |
catttaacaacatttaattccatctatcaattacgtttaggctttgcttcattagcatccaaccctcaaacatctaaatggtacctacatttaatgtggc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35370751 |
catttaacaacatttaattccatctatcaattacgtttaggctttgcttcattagcatccaaccctcaaacatctaaatggtacctacatttaatgtggc |
35370850 |
T |
|
| Q |
416 |
cctttacaatgctccctatgct |
437 |
Q |
| |
|
||||||||||| || ||||||| |
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|
| T |
35370851 |
cctttacaatgttctctatgct |
35370872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 426
Target Start/End: Original strand, 35381013 - 35381428
Alignment:
| Q |
17 |
agaagctcttctcatactttccccaattgaagtatctctcttacacaccatcgtaagtttacaatgttaatattg-taatgaaattcataacttctacaa |
115 |
Q |
| |
|
|||| ||| |||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| |||||| ||| || |
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|
| T |
35381013 |
agaaactcctctcttactttcccattttaaagtatctctcatacacaccatcgtaagtttacaatgttactattgttaatgaacttcatagtgtct--aa |
35381110 |
T |
|
| Q |
116 |
tcaaagtccatatactaat---ttattttcttcttg----gtttccataggtttcactcattacatcacactaaattcaggagaaattactcacttttta |
208 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| |||||| |||||||||||||| |||||||| ||||| ||| ||||||||||| || | |
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|
| T |
35381111 |
tcaaagtccatatgctaattaattattttcttcttgatatatttccacaggtttcactcattgcatcacaccaaatttaggtctaattactcactcttca |
35381210 |
T |
|
| Q |
209 |
tgccaatgtatgactacatttatggtacggtagataaatccacagatgttatatatgaaacctcattgataagaccaaaggagtcaccagatgtggtcca |
308 |
Q |
| |
|
|||| || ||||||||||||||||| || ||||||||||||||||||| || ||||||| |||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
35381211 |
tgcctatatatgactacatttatggcaccgtagataaatccacagatgctacatatgaagcctcattgatgagaccaaaggagtcaccagatgtggtcca |
35381310 |
T |
|
| Q |
309 |
cttaacacatttaacaacatttaattccatctatcaattacgtttaggctttgcttcattagcatccaaccctcaaacatctaaatggtacctacattta |
408 |
Q |
| |
|
||||||||||||||| ||| ||| |||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| ||||| |
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|
| T |
35381311 |
cttaacacatttaactacacttagttccatctatcaattacgtttaggctttacttcattagcctccaatcctcaaacatctaaatggtacctatattta |
35381410 |
T |
|
| Q |
409 |
atgtggccctttacaatg |
426 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
35381411 |
atgtggccctttacaatg |
35381428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 150 - 437
Target Start/End: Original strand, 35355138 - 35355425
Alignment:
| Q |
150 |
tttccataggtttcactcattacatcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacggtagataaatcc |
249 |
Q |
| |
|
|||||| |||||||||||| | |||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
35355138 |
tttccacaggtttcactcactgcatcacaccaaattcagggctaactactcacttttcatgccaatgtatgactacatttatggtacagtgcataaatcc |
35355237 |
T |
|
| Q |
250 |
acagatgttatatatgaaacctcattgataagaccaaaggagtcaccagatgtggtccacttaacacatttaacaacatttaattccatctatcaattac |
349 |
Q |
| |
|
||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| || |||| || |||||| | | |
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|
| T |
35355238 |
acagatgctacatatgaaacctcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgc |
35355337 |
T |
|
| Q |
350 |
gtttaggctttgcttcattagcatccaaccctcaaacatctaaatggtacctacatttaatgtggccctttacaatgctccctatgct |
437 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||| || ||||||| |
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|
| T |
35355338 |
gtttaggctttgcttccttagcttccaatcctcaaacatctaaatggtatctacacttaatgtggccatttacaatgttctctatgct |
35355425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 35355007 - 35355065
Alignment:
| Q |
17 |
agaagctcttctcatactttccccaattgaagtatctctcttacacaccatcgtaagtt |
75 |
Q |
| |
|
|||| ||| |||| ||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
35355007 |
agaaactcctctcttactttcccattttgaagtatctctcatacacaccatcgtaagtt |
35355065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 7e-53; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 157 - 426
Target Start/End: Original strand, 19685137 - 19685406
Alignment:
| Q |
157 |
aggtttcactcattacatcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacggtagataaatccacagatg |
256 |
Q |
| |
|
||||||||||| | |||||||| ||||| ||| |||||||||||| || ||||| || |||||| ||||||||||||| || |||| |||| |||||| |
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|
| T |
19685137 |
aggtttcactcgctgcatcacacaaaatttaggtcaaattactcactcttcatgcctatatatgaccacatttatggtactgtggatacatcctcagatg |
19685236 |
T |
|
| Q |
257 |
ttatatatgaaacctcattgataagaccaaaggagtcaccagatgtggtccacttaacacatttaacaacatttaattccatctatcaattacgtttagg |
356 |
Q |
| |
|
|| ||||||| | | | || |||| | ||||||||||||||||||| ||||||||||||||||||||| || ||||||||| |||| |||||||||| |
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|
| T |
19685237 |
ctacatatgaagcttgttcgaagagacaagaggagtcaccagatgtggtgcacttaacacatttaacaacacttgattccatctttcaactacgtttagg |
19685336 |
T |
|
| Q |
357 |
ctttgcttcattagcatccaaccctcaaacatctaaatggtacctacatttaatgtggccctttacaatg |
426 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| |||||||| || ||||||||||||| ||||||||| |
|
|
| T |
19685337 |
gcttgcttccttagcctccaaccctcaaacatcgaaatggtatctcaatttaatgtggccttttacaatg |
19685406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 172 - 423
Target Start/End: Complemental strand, 19629499 - 19629248
Alignment:
| Q |
172 |
catcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacggtagataaatccacagatgttatatatgaaacct |
271 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||| || ||||| || |||||||||||||||||||| || ||| ||||||||||| || ||||||| | | |
|
|
| T |
19629499 |
catcacacaaaatttaggtcaaattactcactcttcatgcctatatatgactacatttatggtacagtggatgcatccacagatgctacatatgaatctt |
19629400 |
T |
|
| Q |
272 |
cattgataagaccaaaggagtcaccagatgtggtccacttaacacatttaacaacatttaattccatctatcaattacgtttaggctttgcttcattagc |
371 |
Q |
| |
|
|||| |||| | |||| |||||||||||||| ||||||||||||||||||||| || |||| |||| |||| |||| ||||| |||||||| ||||| |
|
|
| T |
19629399 |
gtttgaagagacaagaggaatcaccagatgtggtgcacttaacacatttaacaacacttgattctatctttcaactacgcttagggtttgcttccttagc |
19629300 |
T |
|
| Q |
372 |
atccaaccctcaaacatctaaatggtacctacatttaatgtggccctttaca |
423 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||||||||||| |||||| |
|
|
| T |
19629299 |
ctccaaccctcaaacttctaaatggtatctcaatttaatgtggccttttaca |
19629248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 19630169 - 19630110
Alignment:
| Q |
17 |
agaagctcttctcatactttccccaattgaagtatctctcttacacaccatcgtaagttt |
76 |
Q |
| |
|
|||| |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19630169 |
agaaactcttctcctactttcccctattgaagtatctctcgtacacaccatcgtaagttt |
19630110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 19684657 - 19684716
Alignment:
| Q |
17 |
agaagctcttctcatactttccccaattgaagtatctctcttacacaccatcgtaagttt |
76 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
19684657 |
agaaactcttctcctactttccccaattgaagtatctcacatacacaccatcgtaagttt |
19684716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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