View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18275_low_4 (Length: 421)
Name: NF18275_low_4
Description: NF18275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18275_low_4 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
| [»] scaffold0813 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 18)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Original strand, 4335410 - 4335809
Alignment:
| Q |
8 |
agataatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtg |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4335410 |
agataacactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtg |
4335509 |
T |
|
| Q |
108 |
tttccgtctatcatttggtcttggatggtaccaacaaataatgtctcacccgctgttcaaacagctgttggaatgtcatcccatatttctttgaatgtat |
207 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
4335510 |
tttccttctataatttggtcttggatggtaccaacaaataatgtctcaccagctgttcaaacagctgttggaatgtcaccccatgtttctttgaatgtat |
4335609 |
T |
|
| Q |
208 |
catctgttttcaaagtccttcctaaacttcaatgcctttggtttgagtgtgaatcagaacttcaactttcacaagacacaacaagaattttgaatgcatt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4335610 |
catctgttttcaaagtccttcctaaacttcaatgcctttggtttgagtgtggatcagaacttcaactttcacaagacacaacaagaattttgaatgcatt |
4335709 |
T |
|
| Q |
308 |
atgtgcagcaaattctaaggaattgaaatcaactgcaactacatcacaagtattagatgtgaagacttcactaattgaatgtcgcagtcaagtgcaagat |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4335710 |
atgtgcagcaaattctaaggaattgaaatcaactgcaactacatcacaagtatcagatgtgaagacttcactaattgaatgtcgcagtcaagtgcaagat |
4335809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 4123953 - 4123754
Alignment:
| Q |
10 |
ataatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtt |
109 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| | ||| ||| ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
4123953 |
ataatactgctataacaaaagtgcccttttcggtagtaaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctctcgtgatgtgtt |
4123854 |
T |
|
| Q |
110 |
tccgtctatcatttggtcttggatggtaccaacaaataatgtctcacccgctgttcaaacagctgttggaatgtcatcccatatttctttgaatgtatca |
209 |
Q |
| |
|
||| |||||||||| |||||||||| |||||||||||||| || |||||||||||||||||||||| ||||||||||||| | |||||||| ||| |||| |
|
|
| T |
4123853 |
tccttctatcatttcgtcttggatgttaccaacaaataatctcccacccgctgttcaaacagctgtcggaatgtcatcccttgtttctttgcatgcatca |
4123754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 4344713 - 4344907
Alignment:
| Q |
10 |
ataatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtt |
109 |
Q |
| |
|
|||| |||| |||||||||||| |||||||||||||||| ||||||| ||||||| | ||| ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
4344713 |
ataacactgctataacaaaagtacccttttcagtagtaaggtcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtt |
4344812 |
T |
|
| Q |
110 |
tccgtctatcatttggtcttggatggtaccaacaaataatgtctcacccgctgttcaaacagctgttggaatgtcatcccatatttctttgaatg |
204 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||| | |||| ||| || |||||||| ||| ||| |||||||| | | ||||||| |||| |
|
|
| T |
4344813 |
tccttctatcatttggtcttggatgtcaccaacaaatggtctctcgcccacttttcaaacaactgctgggatgtcatcgcttgtttctttaaatg |
4344907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 173
Target Start/End: Complemental strand, 4320633 - 4320473
Alignment:
| Q |
10 |
ataatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtt |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| | ||| ||| ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
4320633 |
ataatactggtataacaaaagttcccttttcattagtaaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtt |
4320534 |
T |
|
| Q |
110 |
tccgtctatcatttggtcttggatggtaccaacaaataatgtctcacccgctgttcaaacagct |
173 |
Q |
| |
|
||| ||||||||||||||||||||| || |||||||| | ||||||||| ||||||||||| |
|
|
| T |
4320533 |
tccttctatcatttggtcttggatg---tcaccaaataatctgtcacccgcttttcaaacagct |
4320473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 205 - 375
Target Start/End: Complemental strand, 4123734 - 4123564
Alignment:
| Q |
205 |
tatcatctgttttcaaagtccttcctaaacttcaatgcctttggtttgagtgtgaatcagaacttcaactttcacaagacacaacaagaattttgaatgc |
304 |
Q |
| |
|
|||| ||| |||||| |||||||| |||||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4123734 |
tatcgtctattttcagtgtccttccaaaacttcagtgcctttggttggagtgtggatcagaacttcaactttcacaggacacaacaagaattttgaatgc |
4123635 |
T |
|
| Q |
305 |
attatgtgcagcaaattctaaggaattgaaatcaactgcaactacatcacaagtattagatgtgaagactt |
375 |
Q |
| |
|
||| || || ||||||| |||| |||| |||||| ||||||||| |||||||||| |||||||||||| |
|
|
| T |
4123634 |
tttaagttcaacaaattccaagggattggaatcaattgcaactacgtcacaagtatccaatgtgaagactt |
4123564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 222 - 376
Target Start/End: Original strand, 4361380 - 4361534
Alignment:
| Q |
222 |
gtccttcctaaacttcaatgcctttggtttgagtgtgaatcagaacttcaactttcacaagacacaacaagaattttgaatgcattatgtgcagcaaatt |
321 |
Q |
| |
|
|||||||| || |||||| |||||||| | || |||| ||||||||||||||||||||| |||||| ||| |||||||||||| ||| ||||| |||||| |
|
|
| T |
4361380 |
gtccttccgaagcttcaaagcctttggctggaatgtggatcagaacttcaactttcacaggacacagcaataattttgaatgctttaagtgcaacaaatt |
4361479 |
T |
|
| Q |
322 |
ctaaggaattgaaatcaactgcaactacatcacaagtattagatgtgaagacttc |
376 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
4361480 |
ccaaggaattggaatcaactgcaactacatcacaagtatcagaggtgaagacttc |
4361534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 189
Target Start/End: Original strand, 4361144 - 4361323
Alignment:
| Q |
10 |
ataatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtt |
109 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||| | |||| |||||| ||||||| | ||| ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
4361144 |
ataacactggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtt |
4361243 |
T |
|
| Q |
110 |
tccgtctatcatttggtcttggatggtaccaacaaataatgtctcacccgctgttcaaacagctgttggaatgtcatccc |
189 |
Q |
| |
|
||| |||||||||| |||||||||| |||||||||| | |||| ||| || |||||||| ||| ||| |||||||||| |
|
|
| T |
4361244 |
tccttctatcatttcgtcttggatgtcaccaacaaatggtctctcgcccacttttcaaacaactgctgggatgtcatccc |
4361323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 205 - 407
Target Start/End: Original strand, 4344932 - 4345137
Alignment:
| Q |
205 |
tatcatctgttttcaaagtccttcctaaacttcaatgcctttggtttgagtgtgaatcagaacttcaactttcacaagacacaacaagaattttgaatgc |
304 |
Q |
| |
|
|||||||| ||| ||| ||| |||| || |||||| | |||||| | || |||| ||||||||||||||| |||||||| ||||||| |||||| |||| |
|
|
| T |
4344932 |
tatcatctatttccaatgtctttccgaagcttcaaagtctttggctcgaatgtggatcagaacttcaactatcacaagatgcaacaagtattttgcatgc |
4345031 |
T |
|
| Q |
305 |
attatgtgcagcaaattctaaggaattgaaatcaactgcaactacatcacaagtattagatgtgaa---gacttcactaattgaatgtcgcagtcaagtg |
401 |
Q |
| |
|
||| ||||| ||| ||||| ||||||| ||||||||||||||||||| ||||| | ||||||||| ||||||| ||||||||||||| |||||||| |
|
|
| T |
4345032 |
cttaagtgcaacaagttctacggaattggaatcaactgcaactacatcccaagtgtcagatgtgaagacgacttcattaattgaatgtcgtggtcaagtg |
4345131 |
T |
|
| Q |
402 |
caagat |
407 |
Q |
| |
|
|||||| |
|
|
| T |
4345132 |
caagat |
4345137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 205 - 401
Target Start/End: Complemental strand, 4320417 - 4320224
Alignment:
| Q |
205 |
tatcatctgttttcaaagtccttcctaaacttcaatgcctttggtttgagtgtgaatcagaacttcaactttcacaagacacaacaagaattttgaatgc |
304 |
Q |
| |
|
|||||||| ||| || |||||||| || |||||| |||||||| | |||| ||||||||||||||| |||||||| ||||| ||||| ||||||| |
|
|
| T |
4320417 |
tatcatctatttccattgtccttccaaagcttcaaagcctttggctgacatgtggatcagaacttcaactatcacaagatgcaacacgaattgtgaatgc |
4320318 |
T |
|
| Q |
305 |
attatgtgcagcaaattctaaggaattgaaatcaactgcaactacatcacaagtattagatgtgaagacttcactaattgaatgtcgcagtcaagtg |
401 |
Q |
| |
|
||| ||| ||||| ||||| ||||||| |||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
4320317 |
tttaagtgtagcaagttctatggaattggaatcaactgcaactacatcacaagtaccagatgtgaa---ttcattaattgaatgtcgcagtcaagtg |
4320224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 6498541 - 6498399
Alignment:
| Q |
9 |
gataatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgt |
108 |
Q |
| |
|
||||| |||| |||||||||||| ||||||||| |||||| |||||||||||||| || || ||||| |||| | | ||||||| || |||||||| | |
|
|
| T |
6498541 |
gataagactgctataacaaaagttcccttttcaatagtaagatcaaaaagcattggatacatttctttaggtggatttaaaggattttcacgtgatgtat |
6498442 |
T |
|
| Q |
109 |
ttccgtctatcatttggtcttggatggtaccaacaaataatgt |
151 |
Q |
| |
|
|||| ||| ||||| ||||||||||| |||| |||||||||| |
|
|
| T |
6498441 |
ttccttctctcattcggtcttggatgtcaccatcaaataatgt |
6498399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 6753026 - 6753150
Alignment:
| Q |
9 |
gataatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgt |
108 |
Q |
| |
|
||||| |||| |||||||||||||||||||||| |||||| | ||||||||||| ||||| ||||| |||| | ||||||||| || |||||||| | |
|
|
| T |
6753026 |
gataagactgctataacaaaagtgcccttttcaatagtaagattgaaaagcattggatatatttcttttcgtggctttgaaggattttcacgtgatgtat |
6753125 |
T |
|
| Q |
109 |
ttccgtctatcatttggtcttggat |
133 |
Q |
| |
|
| || ||| ||||| |||||||||| |
|
|
| T |
6753126 |
tcccttctctcattcggtcttggat |
6753150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 6545463 - 6545321
Alignment:
| Q |
9 |
gataatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgt |
108 |
Q |
| |
|
||||| |||| |||||||||||||||||||||| |||| | | ||||||||||| ||||| ||||| |||| | ||||||||| || |||||||| | |
|
|
| T |
6545463 |
gataagactgctataacaaaagtgcccttttcaatagttagattgaaaagcattggatatatttcttttcgtggctttgaaggattttcacgtgatgtat |
6545364 |
T |
|
| Q |
109 |
ttccgtctatcatttggtcttggatggtaccaacaaataatgt |
151 |
Q |
| |
|
| || ||| ||||| |||||||| || |||| |||||||||| |
|
|
| T |
6545363 |
tcccttctctcattcggtcttggctgtcaccatcaaataatgt |
6545321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 6588196 - 6588069
Alignment:
| Q |
24 |
acaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcattt |
123 |
Q |
| |
|
||||||||||| |||||| |||||| | ||||||||||| ||||| ||||| ||||| | ||||||||| || |||||||| || || ||| ||||| |
|
|
| T |
6588196 |
acaaaagtgccattttcaatagtaaggatgaaaagcattggatatatttctttttgtggctttgaaggattttcacgtgatgtattcccttctctcattc |
6588097 |
T |
|
| Q |
124 |
ggtcttggatggtaccaacaaataatgt |
151 |
Q |
| |
|
||||||||||| ||| |||||||||| |
|
|
| T |
6588096 |
ggtcttggatgtcgccatcaaataatgt |
6588069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 6621522 - 6621419
Alignment:
| Q |
9 |
gataatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgt |
108 |
Q |
| |
|
||||| |||| |||||||||||| ||||||||| ||||| || |||| |||||| ||||| ||||| ||||| | ||||||||| || || ||||||| |
|
|
| T |
6621522 |
gataagactgctataacaaaagttcccttttcaatagtacgatctaaaaacattggatatatttctttatgtggatttgaaggattttcacgggatgtgt |
6621423 |
T |
|
| Q |
109 |
ttcc |
112 |
Q |
| |
|
|||| |
|
|
| T |
6621422 |
ttcc |
6621419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 6728472 - 6728614
Alignment:
| Q |
9 |
gataatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgt |
108 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||| |||||| | ||||| ||||| ||||| ||||| |||| | ||||||||| || |||||||| | |
|
|
| T |
6728472 |
gataagactgctataacaaaagtgccattttcaatagtaagattgaaaagtattggatatatttcttttcgtggctttgaaggattttcacgtgatgtat |
6728571 |
T |
|
| Q |
109 |
ttccgtctatcatttggtcttggatggtaccaacaaataatgt |
151 |
Q |
| |
|
| || ||| | |||||||||||||| ||| |||||||||| |
|
|
| T |
6728572 |
tcccttctcttgtttggtcttggatgtcgccatcaaataatgt |
6728614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 4133428 - 4133386
Alignment:
| Q |
21 |
ataacaaaagtgcccttttcagtagtaaagtcaaaaagcattg |
63 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||||||| |
|
|
| T |
4133428 |
ataacaaaagtgcccttttcagtcgcaaggtcaaaaagcattg |
4133386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 6651133 - 6651275
Alignment:
| Q |
9 |
gataatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgt |
108 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||| |||||| | || || |||||| ||||| ||| | ||||| | ||||||||| || || ||||| | |
|
|
| T |
6651133 |
gataagactgctataacaaaagtgccgttttcaatagtaagattaagaaacattggatatatttctctatgtggctttgaaggattttcacgagatgtat |
6651232 |
T |
|
| Q |
109 |
ttccgtctatcatttggtcttggatggtaccaacaaataatgt |
151 |
Q |
| |
|
|||| | | || || ||||||||||| |||| ||| |||||| |
|
|
| T |
6651233 |
ttccttttctcgttcggtcttggatgtcaccatcaactaatgt |
6651275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 6815536 - 6815678
Alignment:
| Q |
9 |
gataatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgt |
108 |
Q |
| |
|
||||| |||| ||||| ||||||||| |||||||| |||| | ||||||||||| ||||| ||||| |||| | ||||||||| | |||||||| | |
|
|
| T |
6815536 |
gataagactgctataaaaaaagtgccattttcagtggtaagattgaaaagcattggatatatttctttaggtggctttgaaggatttacacgtgatgtat |
6815635 |
T |
|
| Q |
109 |
ttccgtctatcatttggtcttggatggtaccaacaaataatgt |
151 |
Q |
| |
|
|| | ||| || || | ||||||||| |||| |||||||||| |
|
|
| T |
6815636 |
tttcttctctcgttcgctcttggatgtcaccatcaaataatgt |
6815678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 23)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 5066685 - 5066569
Alignment:
| Q |
33 |
cccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttgga |
132 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || ||||||||||| || |||||||||||||| |||||||||||||| |||||||||| |||||||| |
|
|
| T |
5066685 |
cccttttcagtagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattctcgcgtgatgtgtttccatctatcattttgtcttgga |
5066586 |
T |
|
| Q |
133 |
tggtaccaacaaataat |
149 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
5066585 |
tgtcaccaacaaataat |
5066569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 5073911 - 5073783
Alignment:
| Q |
21 |
ataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatca |
120 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| ||||||||||| ||||| |||||||| || |||||||||||||| ||||||||||| || || |||| |
|
|
| T |
5073911 |
ataacaagagtgcccttttcagtagtaaggtcgaaaagcattggatatatttctttgtgcggctatgaaggattctcacgtgatgtgttcccatcgatca |
5073812 |
T |
|
| Q |
121 |
tttggtcttggatggtaccaacaaataat |
149 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |
|
|
| T |
5073811 |
tttggtcttggatgtcaccgacaaataat |
5073783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 5102617 - 5102489
Alignment:
| Q |
21 |
ataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatca |
120 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| | ||||| ||||||||| | || | |||||||||||| ||||||| |
|
|
| T |
5102617 |
ataacaacagtgcccttttcagtagtaaggtcaaaaagcattggatatatctctctatgtggctatgaaggactttcacatgatgtgtttccatctatca |
5102518 |
T |
|
| Q |
121 |
tttggtcttggatggtaccaacaaataat |
149 |
Q |
| |
|
| |||||||||||| ||||||||||||| |
|
|
| T |
5102517 |
tctggtcttggatgtcaccaacaaataat |
5102489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 5157619 - 5157503
Alignment:
| Q |
33 |
cccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttgga |
132 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || ||||||||| | || ||||||||||| || |||||||||||||| ||||||||||||||||||| |
|
|
| T |
5157619 |
cccttttcagtagtaaggtcaaaaagcattggatacatctctttgggcggctatgaaggattttctcgtgatgtgtttccatctatcatttggtcttgga |
5157520 |
T |
|
| Q |
133 |
tggtaccaacaaataat |
149 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
5157519 |
tgtcaccaacaaataat |
5157503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 5344939 - 5345062
Alignment:
| Q |
21 |
ataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatca |
120 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||||||||||||||| ||||| ||| ||||||| |||||||||||||| || ||||| ||||| ||||||| |
|
|
| T |
5344939 |
ataacaaaagttccctttttagtagtaaggtcaaaaagcattggatatatttctctgtgtggctatgaaggattctcacgcgatgtatttccatctatca |
5345038 |
T |
|
| Q |
121 |
tttggtcttggatggtaccaacaa |
144 |
Q |
| |
|
| |||||||||||| |||||||| |
|
|
| T |
5345039 |
tctggtcttggatgtcaccaacaa |
5345062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 5096775 - 5096920
Alignment:
| Q |
10 |
ataatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtt |
109 |
Q |
| |
|
|||| ||||| |||| || ||| |||||||||||||||| ||||||||||||||| || || ||| | ||||| |||||||||| || ||||||||||| |
|
|
| T |
5096775 |
ataacactggaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtt |
5096874 |
T |
|
| Q |
110 |
tccgtctatcatttggtcttggatggtaccaacaaataatgtctca |
155 |
Q |
| |
|
|||||||||||| ||||||||| || ||||||||||||| ||||| |
|
|
| T |
5096875 |
tccgtctatcatctggtcttggttgtcaccaacaaataatctctca |
5096920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 5243914 - 5243793
Alignment:
| Q |
23 |
aacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatt |
122 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||| || ||||| ||||||||||| ||||||||||| || || ||||| ||||| |||||||| |
|
|
| T |
5243914 |
aacaagagtgcccttttcagtagtaaggtcaaaaagcatcggatatatttctttgtgtggctatgaaggattttcacgcgatgtatttccatctatcatc |
5243815 |
T |
|
| Q |
123 |
tggtcttggatggtaccaacaa |
144 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
5243814 |
tggtcttggatgtcaccaacaa |
5243793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 5181930 - 5181802
Alignment:
| Q |
21 |
ataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatca |
120 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| |||||||||| ||||| || |||||||| |||||||||||||| | |||||||||||| | |||| |
|
|
| T |
5181930 |
ataacaagagtgccgttttcagtagtaaagtccaaaagcattgcatatatttccttgtgtggatatgaaggattctcacatgatgtgtttccagcgatca |
5181831 |
T |
|
| Q |
121 |
tttggtcttggatggtaccaacaaataat |
149 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |
|
|
| T |
5181830 |
tttggtcttggatgtcaccgacaaataat |
5181802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 5354617 - 5354489
Alignment:
| Q |
21 |
ataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatca |
120 |
Q |
| |
|
||||||| ||| ||||| ||| |||| | || ||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
5354617 |
ataacaagagtacccttctcaatagttagttccaaaagcattggatatatttctttatgtggctatgaaggattctcacgtgatgtgtttccatctatca |
5354518 |
T |
|
| Q |
121 |
tttggtcttggatggtaccaacaaataat |
149 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
|
|
| T |
5354517 |
tttggtcttggatgtcaccaacaaataat |
5354489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 5176817 - 5176940
Alignment:
| Q |
21 |
ataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatca |
120 |
Q |
| |
|
||||||| ||||||||| ||| |||||| ||||||||||||||| || ||||||||||| || |||||||||||||| |||||| | ||||| || |||| |
|
|
| T |
5176817 |
ataacaagagtgcccttgtcaatagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattctcacgtgatatatttccatcaatca |
5176916 |
T |
|
| Q |
121 |
tttggtcttggatggtaccaacaa |
144 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
5176917 |
tttggtcttggatgtcaccaacaa |
5176940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 5128408 - 5128295
Alignment:
| Q |
33 |
cccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttgga |
132 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||| |||| || |||||||||| || ||||||||||||| |||||||| |||||||||| |
|
|
| T |
5128408 |
cccttttcagtagtaaggtcaaaaagcattggatatatctctctgtgcggccatgaaggattttcaagtgatgtgtttccatctatcatctggtcttgga |
5128309 |
T |
|
| Q |
133 |
tggtaccaacaaat |
146 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
5128308 |
tgtcaccaacaaat |
5128295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 5426000 - 5426116
Alignment:
| Q |
33 |
cccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttgga |
132 |
Q |
| |
|
||||||||||| |||| |||| |||||||||| || ||||||||||| || ||||||||||| || |||||||||||||| | |||||||||||||||| |
|
|
| T |
5426000 |
cccttttcagtggtaatgtcacaaagcattggatacatctctttgtgcggctatgaaggattttcacgtgatgtgtttccagcgatcatttggtcttgga |
5426099 |
T |
|
| Q |
133 |
tggtaccaacaaataat |
149 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
5426100 |
tgtcaccaacaaataat |
5426116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 5278644 - 5278767
Alignment:
| Q |
21 |
ataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatca |
120 |
Q |
| |
|
||||||| ||||||||| || |||||| ||||||||||||||| || ||||||||||| || |||||||||||||| |||||| | ||||| || |||| |
|
|
| T |
5278644 |
ataacaagagtgcccttgtctatagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattctcacgtgatatatttccatcaatca |
5278743 |
T |
|
| Q |
121 |
tttggtcttggatggtaccaacaa |
144 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
5278744 |
tttggtcttggatgtcaccaacaa |
5278767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 5690168 - 5690039
Alignment:
| Q |
15 |
actggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgt |
114 |
Q |
| |
|
||||| ||||||| |||||||||||| | |||| ||||||||||||||| ||||| ||| |||| || ||||||||||||| |||||| | ||||| | |
|
|
| T |
5690168 |
actggaataacaagtgtgcccttttcaattgtaaggtcaaaaagcattgggtatatttctctgtgcggacatgaaggattctcacgtgatatatttccat |
5690069 |
T |
|
| Q |
115 |
ctatcatttggtcttggatggtaccaacaa |
144 |
Q |
| |
|
|||||||||||||||||||| |||||||| |
|
|
| T |
5690068 |
ctatcatttggtcttggatgtcaccaacaa |
5690039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 5350484 - 5350561
Alignment:
| Q |
33 |
cccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgttt |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || ||||||||||| || ||||||||||| || |||||||||||| |
|
|
| T |
5350484 |
cccttttcagtagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattttcacgtgatgtgttt |
5350561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 146
Target Start/End: Original strand, 5370661 - 5370774
Alignment:
| Q |
33 |
cccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttgga |
132 |
Q |
| |
|
||||||||||||||| ||||||||||||||| || || || |||||||| ||| |||||| || | |||||| ||||| ||||||||||||||||||| |
|
|
| T |
5370661 |
cccttttcagtagtacggtcaaaaagcattggatacatttcattgtgtggccatgtaggattttcacatgatgtttttccatctatcatttggtcttgga |
5370760 |
T |
|
| Q |
133 |
tggtaccaacaaat |
146 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
5370761 |
tgtcaccaacaaat |
5370774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 5447665 - 5447793
Alignment:
| Q |
21 |
ataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatca |
120 |
Q |
| |
|
||||||| |||||||||||| ||||| | ||| || |||||||| ||||| |||||||| || | |||||||| ||| | |||||||||||| ||||| | |
|
|
| T |
5447665 |
ataacaacagtgcccttttcggtagttaggtcgaagagcattggatatatttctttgtgcggatttgaaggatcctcgcatgatgtgtttccatctatta |
5447764 |
T |
|
| Q |
121 |
tttggtcttggatggtaccaacaaataat |
149 |
Q |
| |
|
|| ||||||||||| ||||| ||||||| |
|
|
| T |
5447765 |
ttcggtcttggatgtcaccaagaaataat |
5447793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 51 - 149
Target Start/End: Original strand, 5434143 - 5434241
Alignment:
| Q |
51 |
tcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaaataat |
149 |
Q |
| |
|
|||||||||||||| |||||||||||||| || |||||||||||||| | ||| | ||||| | ||||||| |||||||||| ||||||||||||| |
|
|
| T |
5434143 |
tcaaaaagcattggatatatctctttgtgcggttatgaaggattctcacacgatttatttccatttatcattcagtcttggatgtcaccaacaaataat |
5434241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 5397060 - 5397151
Alignment:
| Q |
53 |
aaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaa |
144 |
Q |
| |
|
|||||||||||| | |||||||||||| || ||||||||||| || |||| |||||||| ||||||||| |||||||||| |||||||| |
|
|
| T |
5397060 |
aaaaagcattggatttatctctttgtgcggatatgaaggattttcatgtgaagtgtttccagctatcatttcgtcttggatgtcaccaacaa |
5397151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 5383391 - 5383517
Alignment:
| Q |
8 |
agataatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtg |
107 |
Q |
| |
|
|||||| |||| ||||||| ||| ||| ||||| | ||| ||||||||| |||| ||||| |||||||| || ||||||||||||| ||||||||| |
|
|
| T |
5383391 |
agataacactgcaataacaagagttcccctttcaattttaaggtcaaaaagtattgtatatatttctttgtgcggccatgaaggattctcacgtgatgtg |
5383490 |
T |
|
| Q |
108 |
tttccgtctatcatttggtcttggatg |
134 |
Q |
| |
|
||||| || |||||| |||||||||| |
|
|
| T |
5383491 |
tttccatccatcattaagtcttggatg |
5383517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 5284392 - 5284264
Alignment:
| Q |
21 |
ataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatca |
120 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| ||||||||||| ||||| ||||||| || ||||| ||| | || | ||||||||||| | || | |
|
|
| T |
5284392 |
ataacaagagtgcccttttcagtagtaaggtcgaaaagcattggatatattgctttgtgcggttatgagggactttcaagcgatgtgtttccattaataa |
5284293 |
T |
|
| Q |
121 |
tttggtcttggatggtaccaacaaataat |
149 |
Q |
| |
|
||| ||| |||||| | ||||||||||| |
|
|
| T |
5284292 |
ttttgtcatggatgtcagcaacaaataat |
5284264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 309
Target Start/End: Complemental strand, 5181708 - 5181633
Alignment:
| Q |
234 |
cttcaatgcctttggtttgagtgtgaatcagaacttcaactttcacaagacacaacaagaattttgaatgcattat |
309 |
Q |
| |
|
|||| ||| |||||| ||||||||| ||||||||||||||||| ||||||||| |||||||||| |||| |||| |
|
|
| T |
5181708 |
cttcgatgtctttgggttgagtgtggctcagaacttcaactttctcaagacacagaaagaattttggatgctttat |
5181633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 357
Target Start/End: Original strand, 5397324 - 5397388
Alignment:
| Q |
293 |
aattttgaatgcattatgtgcagcaaattctaaggaattgaaatcaactgcaactacatcacaag |
357 |
Q |
| |
|
||||||| |||| ||||||| |||||||||| |||||| |||||||| |||||||||||||| |
|
|
| T |
5397324 |
aattttggatgctctatgtgctacaaattctaaagaattggaatcaactaaaactacatcacaag |
5397388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 149
Target Start/End: Original strand, 8877702 - 8877815
Alignment:
| Q |
36 |
ttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatgg |
135 |
Q |
| |
|
|||||| |||||| ||||||||||||||| ||||| |||||||| || ||||||||||| || |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8877702 |
ttttcattagtaaggtcaaaaagcattggatatatttctttgtgcggctatgaaggattttcgcgtgatgtgtttccatctatcatttggtcttggatgt |
8877801 |
T |
|
| Q |
136 |
taccaacaaataat |
149 |
Q |
| |
|
||||||||||||| |
|
|
| T |
8877802 |
caccaacaaataat |
8877815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 20838701 - 20838823
Alignment:
| Q |
12 |
aatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttc |
111 |
Q |
| |
|
||||||||||| | | ||||||||| |||| ||| || |||||||||||||| ||||| || | ||||| ||||||||||| || | |||||| |||| |
|
|
| T |
20838701 |
aatactggtatcaaacaagtgccctattcaatagcaagatcaaaaagcattggatatatatcactatgtggatatgaaggattatcacatgatgtttttc |
20838800 |
T |
|
| Q |
112 |
cgtctatcatttggtcttggatg |
134 |
Q |
| |
|
| ||| ||||||||||||||||| |
|
|
| T |
20838801 |
cttctctcatttggtcttggatg |
20838823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 134
Target Start/End: Complemental strand, 12599142 - 12599062
Alignment:
| Q |
54 |
aaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatg |
134 |
Q |
| |
|
||||||||||| ||||| || |||||||| ||||||||||| || |||||||| ||||| ||| ||| ||||||||||||| |
|
|
| T |
12599142 |
aaaagcattggatatatatccttgtgtggatatgaaggattatcacgtgatgtttttccttctctcaattggtcttggatg |
12599062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 20812346 - 20812468
Alignment:
| Q |
12 |
aatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttc |
111 |
Q |
| |
|
||||||||||| | | ||||||||| |||| ||| || ||||||||||||| ||||| || | ||||| || |||||||| || |||||||| |||| |
|
|
| T |
20812346 |
aatactggtatcaaacaagtgccctattcaatagcaagatcaaaaagcattgcatatatatcactatgtggatacgaaggattatcacgtgatgtttttc |
20812445 |
T |
|
| Q |
112 |
cgtctatcatttggtcttggatg |
134 |
Q |
| |
|
| ||| ||||||||||||||||| |
|
|
| T |
20812446 |
cttctctcatttggtcttggatg |
20812468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 15803019 - 15803101
Alignment:
| Q |
51 |
tcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggat |
133 |
Q |
| |
|
|||||||||||||| ||||| ||| | ||||| ||| ||||||| || | |||||| ||||| ||| ||||| |||||||||| |
|
|
| T |
15803019 |
tcaaaaagcattggatatatatctctatgtggatataaaggattatcacatgatgtttttccttctctcattaggtcttggat |
15803101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 146
Target Start/End: Complemental strand, 36213832 - 36213707
Alignment:
| Q |
21 |
ataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatca |
120 |
Q |
| |
|
||||||| |||||| ||||||||||||| || |||||||| | ||||| |||||||| || |||||||||||||| | |||||||||||| ||||||| |
|
|
| T |
36213832 |
ataacaagagtgccattttcagtagtaagatctaaaagcatcgcttatatatctttgtgcggctatgaaggattctcacatgatgtgtttccatctatca |
36213733 |
T |
|
| Q |
121 |
tttggtcttggatggtaccaacaaat |
146 |
Q |
| |
|
|||||||||||||| |||||||||| |
|
|
| T |
36213732 |
tttggtcttggatgtcaccaacaaat |
36213707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 18935452 - 18935577
Alignment:
| Q |
9 |
gataatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgt |
108 |
Q |
| |
|
||||| |||| | |||||| |||||||||| ||||||||| |||||||||||||| | ||| || ||||||| | ||||||||| | ||| |||||| |
|
|
| T |
18935452 |
gataagactgctgtaacaagagtgccctttgcagtagtaagatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgt |
18935551 |
T |
|
| Q |
109 |
ttccgtctatcatttggtcttggatg |
134 |
Q |
| |
|
|||| || || ||| |||||||||| |
|
|
| T |
18935552 |
ttccttcaattattcagtcttggatg |
18935577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 8902 - 8775
Alignment:
| Q |
22 |
taacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcat |
121 |
Q |
| |
|
|||||| ||||||||||||| |||||| ||||||||| |||| ||||| |||||||| || ||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
8902 |
taacaagagtgcccttttcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccatgaaggattctcacgtgatgtgtttccatctatcat |
8803 |
T |
|
| Q |
122 |
ttggtcttggatggtaccaacaaataat |
149 |
Q |
| |
|
| |||||||||| |||||||||||| |
|
|
| T |
8802 |
taagtcttggatgtctccaacaaataat |
8775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 47986812 - 47986747
Alignment:
| Q |
84 |
tatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaaataat |
149 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47986812 |
tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat |
47986747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 47996099 - 47996034
Alignment:
| Q |
84 |
tatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaaataat |
149 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47996099 |
tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat |
47996034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 48005386 - 48005321
Alignment:
| Q |
84 |
tatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaaataat |
149 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48005386 |
tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat |
48005321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 48014671 - 48014606
Alignment:
| Q |
84 |
tatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaaataat |
149 |
Q |
| |
|
||||||||||| || |||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48014671 |
tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaataat |
48014606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 6905899 - 6905806
Alignment:
| Q |
51 |
tcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaa |
144 |
Q |
| |
|
||||||||||||| ||||| || | || || ||||||||||| || |||||| | ||||| ||| ||||||||||||||||| |||||||| |
|
|
| T |
6905899 |
tcaaaaagcattgtgtatatatccctatgcggatatgaaggattatcacgtgatatttttccttctctcatttggtcttggatgtcaccaacaa |
6905806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 3262740 - 3262637
Alignment:
| Q |
30 |
gtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtctt |
129 |
Q |
| |
|
||||||| |||| |||||| |||||||||||||| ||||| || | ||||| ||||| ||||| || |||||||| ||||| |||||||||||||||| |
|
|
| T |
3262740 |
gtgccctattcaatagtaagatcaaaaagcattggatatatatccctatgtggatatga-ggattttcacgtgatgtttttccctctatcatttggtctt |
3262642 |
T |
|
| Q |
130 |
ggatg |
134 |
Q |
| |
|
||||| |
|
|
| T |
3262641 |
ggatg |
3262637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 31175916 - 31176038
Alignment:
| Q |
12 |
aatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttc |
111 |
Q |
| |
|
||||||||||| | | ||||||||| |||| ||| || ||||||||||||| ||||| ||| | ||||| ||||||||||| || |||| || |||| |
|
|
| T |
31175916 |
aatactggtatcaaacaagtgccctattcaatagcaagatcaaaaagcattgcatatatatctctatgtggatatgaaggattatcatgtgacgtttttc |
31176015 |
T |
|
| Q |
112 |
cgtctatcatttggtcttggatg |
134 |
Q |
| |
|
| ||| ||||||||||||||||| |
|
|
| T |
31176016 |
cttctctcatttggtcttggatg |
31176038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 3407389 - 3407323
Alignment:
| Q |
78 |
tgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaa |
144 |
Q |
| |
|
||||| ||| ||||||| || |||||||| ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
3407389 |
tgtggatatcaaggattatcacgtgatgtttttccttctatcatttggtcttggatgtcaccaacaa |
3407323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 3391629 - 3391536
Alignment:
| Q |
51 |
tcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatggtaccaacaa |
144 |
Q |
| |
|
|||||||||||||| ||||| ||| | ||||| ||||||||||| || | | |||| ||||| ||| ||||| ||||||||||| |||||||| |
|
|
| T |
3391629 |
tcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatcatgtttttccttctctcattaggtcttggatgtcaccaacaa |
3391536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 3314966 - 3315049
Alignment:
| Q |
51 |
tcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatg |
134 |
Q |
| |
|
||||||| |||||| ||||| || | |||| |||||||| || || |||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
3314966 |
tcaaaaaacattggatatatatccctatgtgaatatgaaggtttatcacgtgatgtttttccttctatcatttggtcttggatg |
3315049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 3364277 - 3364359
Alignment:
| Q |
51 |
tcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggat |
133 |
Q |
| |
|
|||||||||||||| ||||| ||| | ||||| ||||||||||| || | | |||| ||||| ||| ||||| |||||||||| |
|
|
| T |
3364277 |
tcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatcatgtttttccttctctcattaggtcttggat |
3364359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 3325091 - 3325010
Alignment:
| Q |
53 |
aaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttccgtctatcatttggtcttggatg |
134 |
Q |
| |
|
|||||||||||| ||||| || | ||||| ||||||||| | || | ||||| ||||| ||||||||||||||||||||| |
|
|
| T |
3325091 |
aaaaagcattggatatatatccctctgtggatatgaaggactatcacacgatgtttttccttctatcatttggtcttggatg |
3325010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 6725 - 6828
Alignment:
| Q |
9 |
gataatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgt |
108 |
Q |
| |
|
||||| |||| |||||||||||| ||||||||| ||||| || |||| |||||| ||||| ||||| ||||| | ||||||||| || || ||||||| |
|
|
| T |
6725 |
gataagactgctataacaaaagttcccttttcaatagtacgatctaaaaacattggatatatttctttatgtggatttgaaggattttcacgggatgtgt |
6824 |
T |
|
| Q |
109 |
ttcc |
112 |
Q |
| |
|
|||| |
|
|
| T |
6825 |
ttcc |
6828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0813 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 4841 - 4699
Alignment:
| Q |
9 |
gataatactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgt |
108 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||| |||||| | || || |||||| ||||| ||| | ||||| | ||||||||| || || ||||| | |
|
|
| T |
4841 |
gataagactgctataacaaaagtgccgttttcaatagtaagattaagaaacattggatatatttctctatgtggctttgaaggattttcacgagatgtat |
4742 |
T |
|
| Q |
109 |
ttccgtctatcatttggtcttggatggtaccaacaaataatgt |
151 |
Q |
| |
|
|||| | | || || ||||||||||| |||| ||| |||||| |
|
|
| T |
4741 |
ttccttttctcgttcggtcttggatgtcaccatcaactaatgt |
4699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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