View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18275_low_7 (Length: 309)
Name: NF18275_low_7
Description: NF18275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18275_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 21 - 289
Target Start/End: Complemental strand, 29565205 - 29564943
Alignment:
| Q |
21 |
gttagaattcaaattgaaacacccatataaaagtaaagaaagaagtaaaatcaatgctgaaattcaaaaccatacatatgagaatacagcttatgctaaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| |
|
|
| T |
29565205 |
gttagaattcaaattgaaacacccatctaaaagtaaagaaagaagtaaaatcaatgctgaaattcaaaaccatacagcttaa--------ttatgctaaa |
29565114 |
T |
|
| Q |
121 |
aacaaaagcaaagaagcagttgaaatcggaagtgtaattaagcacacctgtgttcttgatacacgttccgtctcgtgtctgtgtatatatttaaacatgc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29565113 |
aacaaaagcaaagaagcagttgaaatcggaagtgtaattaagcacacctgtgttcttgatacacgttccgtctcgtgtctgtgtatatatttaaacatgc |
29565014 |
T |
|
| Q |
221 |
atgttggtccaaatattacttgctccagctatttatgtcgtataattaagccatca--atgtataatggac |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29565013 |
atgttggtccaaatattacttgctccagctatttatgtcgtataattaagccatcaatatgtataatggac |
29564943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University