View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18275_low_9 (Length: 287)
Name: NF18275_low_9
Description: NF18275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18275_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 71 - 271
Target Start/End: Original strand, 3823191 - 3823391
Alignment:
| Q |
71 |
ggagaggagtggaggagaaaggataatggttgaaaatttgaaaacgagttaatggtattttcgccattttagattgttcaatccatacaatttcaacaat |
170 |
Q |
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| T |
3823191 |
ggagaggagtggaggagaaaggataatggttgaaaatttgaaaatgagttaatggtattttcgccattttagattgttcgatccatacaatttcaacaat |
3823290 |
T |
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| Q |
171 |
cgaattggtgattcaccttatgtttagttcatctcagcttggtgctttgaagttggtctcgtctcctccgatggaacttgatgtatgcattgatccttac |
270 |
Q |
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| T |
3823291 |
caaattggtgattcaccttatgtttggttcatctcagcttggtgctttgaagttggtctcgtctcctctgatggaacttgatgcatgcattgatccttac |
3823390 |
T |
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| Q |
271 |
t |
271 |
Q |
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| T |
3823391 |
t |
3823391 |
T |
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