View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18276_high_4 (Length: 539)
Name: NF18276_high_4
Description: NF18276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18276_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 7 - 463
Target Start/End: Original strand, 43074904 - 43075368
Alignment:
| Q |
7 |
gaagcataggtgactggattagcacataaaaccatcggcgtgatagtctggactctggtaggtacagatgttgcaattgcattagtggttggaattagtt |
106 |
Q |
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| T |
43074904 |
gaagcttaggtcactggattagcacataaaaccatcggcgtgatagtctggactctggtaggtacagatgttgcaattgcattattggttggaattagtt |
43075003 |
T |
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| Q |
107 |
gtttggactcatgcattatcctttcattcacggatcaatatgttactcttaattaatagttagtggaccctttaattaacaatttcattactttctcctt |
206 |
Q |
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| T |
43075004 |
gtttggactcatgcattatcctttcattcacggatcaatatgttactcttaattaatagttagtggaccctttaattaacaatttcattactttctcctt |
43075103 |
T |
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| Q |
207 |
ccctaaagcttataa-------ccaactttcaattccattaatttt-ttatgaacttaatttgcaagttgaaactagttttaattttcttactcgtgaca |
298 |
Q |
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| T |
43075104 |
ccctaaagcttataagttataaccaactttcaattccattaatttttttatgaacttaatttgcaagttgaaactagttttaattttcttactcgtggca |
43075203 |
T |
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| Q |
299 |
tggattgaactgatgaatgaaggtaatatgctagtagtaatttgatttttagagaaaaagtcttgaccaattgagcaacaagtgactaatcgttaagtaa |
398 |
Q |
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| T |
43075204 |
tggattgaactgatgaatgaaggtaatatgctagtagtaatttgatttttagagaaaaagtcttgaccaattgagaaacaggtggctaatcgttaagtaa |
43075303 |
T |
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| Q |
399 |
agtttgatctataattatttcattaaaaaatcgaacttgaatacagccgaaatgatttgccctct |
463 |
Q |
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| T |
43075304 |
agtttgatctataattattttattaaaaaatcgaacttgaatacagccgaaatgattttccctct |
43075368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 469 - 516
Target Start/End: Original strand, 43075486 - 43075533
Alignment:
| Q |
469 |
atcatgtttttctccttgatccgagtttgaactcaaccgggataccca |
516 |
Q |
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| T |
43075486 |
atcatgtttttctccttagtccgagtttgaactcaaccgggataccca |
43075533 |
T |
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