View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18276_high_5 (Length: 471)
Name: NF18276_high_5
Description: NF18276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18276_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 10 - 220
Target Start/End: Complemental strand, 45361655 - 45361445
Alignment:
| Q |
10 |
aagaatatcatgattttgatcggtagtttttgcaagtatttggtttggtaggatataagatttttatttttcattgaactaaattttatataattagtaa |
109 |
Q |
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| T |
45361655 |
aagaatatcatgattttgatcggtagtttttgcaagtatttggtttggtaggatataagatttttatttttcattgaactaaattttatataattagtaa |
45361556 |
T |
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| Q |
110 |
ttgtaggaaataattattgttgatggatgtggtttatcaagtattactctcgcacaaaatatattgttgagctaaactataatgcaaagtaactaaccac |
209 |
Q |
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| T |
45361555 |
ttgtaggaaataattattgttgatggatgtggtttatcaagtattactctcgcacaaaatatattgttgagctaaactataatgcaaagtaactaaccac |
45361456 |
T |
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| Q |
210 |
ctaagctctac |
220 |
Q |
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||||||||||| |
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| T |
45361455 |
ctaagctctac |
45361445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 297 - 420
Target Start/End: Complemental strand, 45361381 - 45361259
Alignment:
| Q |
297 |
catgtgaaagaaagacatgatcgatgagatcatggtattataaataaaggataaagtagaaaggaaccgaaccgaaccccgcaactaaaaattaaactta |
396 |
Q |
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| T |
45361381 |
catgtgaaagaaagacatgatcgatgagatcatggtattataaataaaggataaagtagaaaggaaccgaaccgaaccccgcaactaaaaattaaactta |
45361282 |
T |
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| Q |
397 |
aacagtgtttattgttgtgctctg |
420 |
Q |
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| T |
45361281 |
aacagtg-ttattgttgtgctctg |
45361259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 8590783 - 8590645
Alignment:
| Q |
10 |
aagaatatcatgattttgatcggtagtttttgcaagtatttggtttggtaggatataagatttttatttttcattgaactaaattttatataattagtaa |
109 |
Q |
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| T |
8590783 |
aagaatatcatgattttgattcgtagtttttgtaagtatttgcttaggtaggatatacgatttttattcttcattaaactaaattttatacaatcagttg |
8590684 |
T |
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| Q |
110 |
ttgtaggaaataattattgttgatggatgtggtttatca |
148 |
Q |
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| T |
8590683 |
tggtagaaaatagttattgttgatcgattttgtttatca |
8590645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 146
Target Start/End: Original strand, 39212505 - 39212641
Alignment:
| Q |
10 |
aagaatatcatgattttgatcggtagtttttgcaagtatttggtttggtaggatataagatttttatttttcattgaactaaattttatataattagtaa |
109 |
Q |
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|||||||||||||||||||| ||||||||||| |||| |||| |||| | |||||||| ||||||| |||||| |||||||||||||||||| ||||| |
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| T |
39212505 |
aagaatatcatgattttgattggtagtttttgtaagtgtttgttttgccggtatataagacttttattcttcatttaactaaattttatataatcagtaa |
39212604 |
T |
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| Q |
110 |
ttgtaggaaataattattgttgatggatgtggtttat |
146 |
Q |
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| | || |||| ||||||| ||| ||||| |||||| |
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| T |
39212605 |
tcgcagaaaattgttattgtagattgatgttgtttat |
39212641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 13 - 148
Target Start/End: Original strand, 6864128 - 6864263
Alignment:
| Q |
13 |
aatatcatgattttgatcggtagtttttgcaagtatttggtttggtaggatataagatttttatttttcattgaactaaattttatataattagtaattg |
112 |
Q |
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||||||||||||||||| ||||||||||| ||||||||| |||| | |||||||||||||||| |||| | ||||||||||||||||||| |||| || |
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| T |
6864128 |
aatatcatgattttgattggtagtttttgtaagtatttgccttggcaacatataagatttttattcttcacttaactaaattttatataattggtaactg |
6864227 |
T |
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| Q |
113 |
taggaaataattattgttgatggatgtggtttatca |
148 |
Q |
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||| ||| | ||| ||||||| ||||| |||||||| |
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| T |
6864228 |
tagaaaaaagttactgttgatcgatgttgtttatca |
6864263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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