View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18276_low_10 (Length: 375)
Name: NF18276_low_10
Description: NF18276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18276_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 22734487 - 22734145
Alignment:
| Q |
18 |
gaagtagttatatttggaggcatgccggacatcaaatatggttacttttctcaatcggaatttgaaccttagttcgccatgttgtagaagtttagaccct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22734487 |
gaagtagttatatttggaggcatgccggacatcaaatatggttacttttctcaatcggaatttgaaccttagttcgccatgttgtagaagtttagaccct |
22734388 |
T |
|
| Q |
118 |
tccgtcaaaccaacgaggttgattctagtgcaggttgagtctaatgcaatgtgctaaactacccacaatgtggtgaacctaaacttgaattccgagagat |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22734387 |
tccgtcaaaccaacgaggttgattctagtgcatgttgagtctaatgcaatgtgctaaactacccacaatgtggtgaacctaaacttgaattccgagagat |
22734288 |
T |
|
| Q |
218 |
gtatatatccatattagtatccgacacgcctcaaataagtagagtttggtggttagttcgaagtttctaacagcccatttctcatttcatattgaagtga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
22734287 |
gtatatatccatattagtatccgacacgcctcaaataagtagagtttggtggttagttctaagtttctaactgcccatttctcatttcatattgaagtga |
22734188 |
T |
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| Q |
318 |
tcgaaacccatttgatagagaagcagcaacgcagggtatgtgt |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22734187 |
tcgaaacccatttgatagagaagcagcaacgcagggtatgtgt |
22734145 |
T |
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