View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18276_low_11 (Length: 368)
Name: NF18276_low_11
Description: NF18276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18276_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 36767676 - 36768012
Alignment:
| Q |
19 |
ttgtgaagtgtcaccaaaagcagaacctattggcagtgagttagactcattgatagagctcaaatgccactgatgatgaagaagtaaaggatcctccatc |
118 |
Q |
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| T |
36767676 |
ttgtgaagtgtcaccaaaagcagaacctattggcagtgagttagactcattgatagagctcaaatgccactgatgatgaagaagtaaaggatcctccatc |
36767775 |
T |
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| Q |
119 |
atttcctgcaagatcaaatacatgttttcacaatgttcatggaaatttcatacattttccttgtggctttattagattatttcactgctttattattaga |
218 |
Q |
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| T |
36767776 |
atttcctgcaagatcaaatacatgttttcacaatgttcatggaaatttcatacattttccttgtggctttattagattatttcactgctttattattaga |
36767875 |
T |
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| Q |
219 |
tacttgtcttattttctaaccaaatatttgatgcttccaaaattagtcactgccaaagtatgaatgatagtaagttcagagaaaaactatttgcaagaac |
318 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36767876 |
tacttgtcttattttctaatcaaatatttgatgcttccaaaattagtcactgccaaagtatgaatgatagtaagttcagagaaaaactatttgcaagaac |
36767975 |
T |
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| Q |
319 |
tatatatatcttacctgatcaggaaaccctctgatga |
355 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
36767976 |
tatatatatcttacctgatcaggaaaccctctgatga |
36768012 |
T |
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