View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18276_low_12 (Length: 361)
Name: NF18276_low_12
Description: NF18276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18276_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 48768459 - 48768115
Alignment:
| Q |
1 |
atgcaggaggctttgttatgtgggctggtaaggtgacattgttgtatatttttatttgtttcttatttatcactattgataaatattatttttacaggaa |
100 |
Q |
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| T |
48768459 |
atgcaggaggctttgttatgtgggctggtaaggtgacattgttgtatatttttatttgtttcttatttatcactattgataaatattatttttacaggaa |
48768360 |
T |
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| Q |
101 |
cttggagagttggaggtgttcttgctgtctctcgtgcatttggtgatagactcttgaagcagtatgttgttgctgatccagaaatccaggtatgtgtctg |
200 |
Q |
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| T |
48768359 |
cttggagagttggaggtgttcttgctgtctctcgtgcatttggtgatagactcttgaagcagtatgttgttgctgatccagaaatccaggtatgtgtctg |
48768260 |
T |
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| Q |
201 |
ctatggttagagaaatccattcttgactatttcatgtggttatagattcatttcaacctgtactttgtatagtgtgtggttaaatacacgagtctgtttg |
300 |
Q |
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| T |
48768259 |
ctatggttagagaaatccattcttgactatttcatgtggttatagattcatttcaacctgtcctttgtatagtgtgtggttaaatacacgagtctgtttg |
48768160 |
T |
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| Q |
301 |
ttttaagttatcttcgtagatttatggaatatgtggataaggaat |
345 |
Q |
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| T |
48768159 |
ttttaagttatcttcgtagatttatggaatatgtggataaggaat |
48768115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 91 - 191
Target Start/End: Original strand, 3411440 - 3411540
Alignment:
| Q |
91 |
tttacaggaacttggagagttggaggtgttcttgctgtctctcgtgcatttggtgatagactcttgaagcagtatgttgttgctgatccagaaatccagg |
190 |
Q |
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| T |
3411440 |
tttacaggaacttggagagtcggtggtgttcttgctgtttctcgtgcatttggtgatagactccttaagcaatacgttgttgctgatccggaaatccagg |
3411539 |
T |
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| Q |
191 |
t |
191 |
Q |
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| |
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| T |
3411540 |
t |
3411540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 3435385 - 3435285
Alignment:
| Q |
91 |
tttacaggaacttggagagttggaggtgttcttgctgtctctcgtgcatttggtgatagactcttgaagcagtatgttgttgctgatccagaaatccagg |
190 |
Q |
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|||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| | ||||| || |||||||||||||| |||||||||| |
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| T |
3435385 |
tttacaggaacttggagagtcggtggtgttcttgctgtttctcgtgcatttggtgatagactccttaagcaatacgttgttgctgatccggaaatccagg |
3435286 |
T |
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| Q |
191 |
t |
191 |
Q |
| |
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| |
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| T |
3435285 |
t |
3435285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 52259465 - 52259517
Alignment:
| Q |
91 |
tttacaggaacttggagagttggaggtgttcttgctgtctctcgtgcatttgg |
143 |
Q |
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| T |
52259465 |
tttacaggaacatggagggttggcggtattcttgctgtttcccgtgcatttgg |
52259517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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