View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18276_low_3 (Length: 546)
Name: NF18276_low_3
Description: NF18276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18276_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 14 - 528
Target Start/End: Complemental strand, 2272788 - 2272274
Alignment:
| Q |
14 |
cacagaaccaattgaaaagctagacaattcaaattaataaactgatatgaacatcaacatatattcactttgtcttggacacgaacattaagtctgtcct |
113 |
Q |
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| T |
2272788 |
cacagaaccaattgaaaagctagacaattcaaattaataaactgatatgaacatcaacatatattcactttgtcttggacacgaacattaagtctgtcct |
2272689 |
T |
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| Q |
114 |
taaacattattcattcttctgctatttatgaaaaagaatggtaaaattagacaccgagccaaatctcgtaaattattctacattcctagagcgaggataa |
213 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272688 |
taagcattattcattcttctgctatttatgaaaaagaatggtaaaattagacaccgagccaaatctcgtaaattattctacattcctagagcgaggataa |
2272589 |
T |
|
| Q |
214 |
agatgaatcaatttccaccgtcaattcaataattataaactagtcagatgaattaaacagatagattcctcttggatttgtgtgaatccttgagcaaaac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272588 |
agatgaatcaatttccaccgtcaattcaataattataaactagtcagatgaattaaacagatagattcctcttggatttgtgtgaatccttgagcaaaac |
2272489 |
T |
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| Q |
314 |
tttctgatggatcatgaatcatgatctgtaaaatagccaaaccagagaagtctcaattccaatcctttctgattattcacttgacaatacatattaaatg |
413 |
Q |
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| T |
2272488 |
tttctgatggatcatgaatcatgatctgtaaaatagccaaaccagagaagtctcaattccaatcctttctgattattcacttgacaatacatattaaatg |
2272389 |
T |
|
| Q |
414 |
cacaagaagactcaaaccattacaagaaccatatcccaatgtagtacaatttgataaactacaagcatagtcaacagcaccagccaaatcaggatgcaaa |
513 |
Q |
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| T |
2272388 |
cacaagaagactcaaaccattacaagaaccatatcccaatgtagtacaatttgataaactacaagcatagtcaacagcaccagccaaatcaggatgcaaa |
2272289 |
T |
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| Q |
514 |
atacaccactgtatt |
528 |
Q |
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||||||||||||||| |
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| T |
2272288 |
atacaccactgtatt |
2272274 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 40772478 - 40772552
Alignment:
| Q |
196 |
ttcctagagcgaggataaagatgaatcaatttccaccgtcaattcaataattataaactagtcagatgaattaaa |
270 |
Q |
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|||||| |||||| ||||||| ||||||||||||| ||||||||||||| | ||||||||||||||| |||||| |
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| T |
40772478 |
ttcctaaagcgagaataaagaggaatcaatttccattgtcaattcaataactgtaaactagtcagatggattaaa |
40772552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 346 - 502
Target Start/End: Complemental strand, 46353947 - 46353776
Alignment:
| Q |
346 |
atagccaaaccagagaagtctcaattccaatcctttctgattattcacttgacaatacatattaaatgcacaag-------------aagactcaaacca |
432 |
Q |
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||||||||||| || || || |||| ||||||||| |||||||| ||||||| ||||||||||||||||| ||| ||||||||||||| |
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| T |
46353947 |
atagccaaacctgaaaaatcacaatcccaatcctt-ctgattatgcacttgataatacatattaaatgcataagaagcattcccttcaagactcaaacca |
46353849 |
T |
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| Q |
433 |
ttacaagaa---ccatatcccaatgtagtacaatttgataaactacaagcatagtcaacagcaccagccaaat |
502 |
Q |
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||||||||| |||||||| |||| |||||||| |||||| ||||| ||||| |||| | ||||||||||| |
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| T |
46353848 |
ttacaagaagatccatatcctaatgcagtacaatctgataagctacatgcataatcaatactaccagccaaat |
46353776 |
T |
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