View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18276_low_8 (Length: 417)
Name: NF18276_low_8
Description: NF18276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18276_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 403
Target Start/End: Original strand, 28669787 - 28670179
Alignment:
| Q |
11 |
aatgaaatgaacactaagttgcttctttgtgtgacaacttgaagggtgatagtgcagaagctccaaggccgtttgcaaaacgatatgccaaatactcttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28669787 |
aatgaaatgaacactaagttgcttctttgtgtgacaacttgaagggtgatagtgcagaagctccaaggccatttgcaaaacgatatgccaaatactcttt |
28669886 |
T |
|
| Q |
111 |
caaagaagtatctctgtatattggtgaattttctttagataacagttcctttattggtcctatcactttttccataccctcatgtgagtaatcatgttgt |
210 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28669887 |
caaagaagtatctctgtatattggtggattttctttagataacaattcctttattggtcctatcactttttccataccctcatgtgagtaatcatgttgt |
28669986 |
T |
|
| Q |
211 |
gttctaaaaaaggttgcaactgaaattcttgggcctgcatggtttgctaaaactctgtgttgaacacttttgaacttgtcattactcacaagctggagaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28669987 |
gttctaaaaaaggttgcaactgaaattcttgggcctgcatggtttgctaaaactctgtgttgaacacttgtgaacttgtcattactcacaagctggagaa |
28670086 |
T |
|
| Q |
311 |
agaaaaattaatattgatcatagtcaaaaatcaattatatttatgagctttgatacattgttactctacatttcaccatgttactatagtttt |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28670087 |
agaaaaattaatattgatcatagtcaaaaatcaattatatttatgagctttgatacattgttactctacatttcaccatgttactatagtttt |
28670179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 44 - 336
Target Start/End: Original strand, 28647715 - 28648005
Alignment:
| Q |
44 |
acaacttgaagggtgatagtgcagaagctccaaggccgtttgcaaaacgatatgccaaatactctttcaaagaagtatctctgtatattggtgaattttc |
143 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| |||| ||||||||| ||| |||||||||||||| |||||| |||||||||| | ||||| |
|
|
| T |
28647715 |
acaacttgaaaggtgatagtgcagaagctccaaacccgcttgccaaacgatatttcaagtactctttcaaagatgtatctttgtatattggagggttttc |
28647814 |
T |
|
| Q |
144 |
tttagataacagttcctttattggtcctatcactttttccataccctcatgtgagtaatcatgttgtgttctaaaaaaggttgcaactgaaattcttggg |
243 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||||| || |||||| | || | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28647815 |
tttagataaaagttccttgattggtccaatcacttttggtatgccctcaggagaatgatcatgttgtgttctaaaaaaggttgcaactgaaattcttggg |
28647914 |
T |
|
| Q |
244 |
cctgcatggtttgctaaaactctgtgttgaacacttttgaacttgtcattactcacaagctggagaaagaaaaattaatattgatcatagtca |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| | |||| |||||||| |||||||||||||| |
|
|
| T |
28647915 |
cctgcatggtttgctaaaactctgtgttgaacacttctgtacttgtcattactcacaagctgtaaaaag-aaaattaa-attgatcatagtca |
28648005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 44 - 316
Target Start/End: Original strand, 28638973 - 28639245
Alignment:
| Q |
44 |
acaacttgaagggtgatagtgcagaagctccaaggccgtttgcaaaacgatatgccaaatactctttcaaagaagtatctctgtatattggtgaattttc |
143 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| ||| |||| ||||||||| ||| ||||||||||||||||| ||| |||||||||||| ||||| |
|
|
| T |
28638973 |
acaacttgaaaggggatagtgcagaagctccaaaaccgcttgccaaacgatatttcaagtactctttcaaagaagtgtctttgtatattggtgggttttc |
28639072 |
T |
|
| Q |
144 |
tttagataacagttcctttattggtcctatcactttttccataccctcatgtgagtaatcatgttgtgttctaaaaaaggttgcaactgaaattcttggg |
243 |
Q |
| |
|
|| |||||| |||||||| |||||||| |||| |||| || |||||| | |||| |||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
28639073 |
ttcagataaaagttccttgattggtccaatcaattttggtatgccctcaggagagtgatcatgttgtgttctaaagagggttgcaactgaaattcttgga |
28639172 |
T |
|
| Q |
244 |
cctgcatggtttgctaaaactctgtgttgaacacttttgaacttgtcattactcacaagctggagaaagaaaa |
316 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
28639173 |
cctgcatgttttgctaaaactctgtgttgaacacttttaaacttgtcattactcacaagctgcagaaagaaaa |
28639245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 61 - 317
Target Start/End: Original strand, 28672910 - 28673157
Alignment:
| Q |
61 |
agtgcagaagctccaaggccgtttgcaaaacgatatgccaaatactctttcaaagaagtatctctgtatattggtgaattttctttagataacagttcct |
160 |
Q |
| |
|
||||||||| ||||| |||||||| |||||||| |||||| |||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
28672910 |
agtgcagaaaatccaatgccgtttgtaaaacgatgtgccaagaactctttcaaagaagtgtctctatatattggtagattttctttagataacagttcct |
28673009 |
T |
|
| Q |
161 |
ttattggtcctatcactttttccataccctcatgtgagtaatcatgttgtgttctaaaaaaggttgcaactgaaattcttgggcctgcatggtttgctaa |
260 |
Q |
| |
|
| ||||| || ||||||||| ||| ||||| | | |||||| | |||||||| || ||| | ||||||||||||||| ||||| |||||||| |
|
|
| T |
28673010 |
tgattggaccaatcacttttggcattccctc------ggattcatgt---gctctaaaaagggatgcgattgaaattcttgggccagcatgttttgctaa |
28673100 |
T |
|
| Q |
261 |
aactctgtgttgaacacttttgaacttgtcattactcacaagctggagaaagaaaaa |
317 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||| ||| ||||||||||| |
|
|
| T |
28673101 |
aactctgtgttgaacacttgtgaacttatcattactcacaatctgtagaaagaaaaa |
28673157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 305
Target Start/End: Original strand, 28690058 - 28690153
Alignment:
| Q |
210 |
tgttctaaaaaaggttgcaactgaaattcttgggcctgcatggtttgctaaaactctgtgttgaacacttttgaacttgtcattactcacaagctg |
305 |
Q |
| |
|
||||||||| || | ||| |||||||||||||| ||| ||| ||||||||||||||||||||||| || |||||||||||||| | |||||||| |
|
|
| T |
28690058 |
tgttctaaacaatgatgctactgaaattcttggacctatatgctttgctaaaactctgtgttgaacgctaatgaacttgtcattagttacaagctg |
28690153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University