View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18276_low_9 (Length: 393)
Name: NF18276_low_9
Description: NF18276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18276_low_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 393
Target Start/End: Original strand, 26512346 - 26512725
Alignment:
| Q |
16 |
attaagggcacaagataataatatgaagatgataaaaaa--gaaagaacaagaaaggaacctgagatagcattaactagatggaagcaagtcttgaatga |
113 |
Q |
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| T |
26512346 |
attaagggcacaagataataatatgaagatgataaaaaaaagagagaacaagaaaggaacctgagatagcattaactagatggaagcaagtcttgaatga |
26512445 |
T |
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| Q |
114 |
agaagcgttacccacatgaaccatgtgatattcatccttattttttgaatcattcacttgatacactttttcatcaaccaaaagtggtacttcaatggag |
213 |
Q |
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| T |
26512446 |
agaagcgttacccacatgaaccatgtggtattcatccttattttttgaatcattcacttgataaaccttttcatcaaccaaaagtggtacttcaatggag |
26512545 |
T |
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| Q |
214 |
gaacatcgatcaccttgctcagcagccataagtatactcgagaagatgaatgcgttttgtaatttgtgactgcttaatagacaattgcactttacttctg |
313 |
Q |
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| T |
26512546 |
gaacatcgatcaccttgctcagcagccataagtatactcgagaagatgaatgcgttttgtaatttgtgactgcttaatagacaaatgcactttacctctg |
26512645 |
T |
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| Q |
314 |
ttgttttatagtgagtccacacacgtggttcctttctctttttccccaaacctaatttaatattacccactaataacaaa |
393 |
Q |
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| T |
26512646 |
ttgttttatagtgagtccacacacgtggttcctttctctttttccccaaacctaatttaatattacccactaataacaaa |
26512725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 62 - 242
Target Start/End: Original strand, 26483868 - 26484066
Alignment:
| Q |
62 |
caagaaaggaacctgagatagcattaactagatggaagcaagtcttgaatgaagaagcgttacccacatgaaccatgtgatattcatccttattt----- |
156 |
Q |
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| T |
26483868 |
caagaaaggaacctgaaatagcattaactagatggaagcaagtcttgaataaagaagtgttacccacatgaaccatgtggtattgatcctcagtttctgc |
26483967 |
T |
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| Q |
157 |
-------------tttgaatcattcacttgatacactttttcatcaaccaaaagtggtacttcaatggaggaacatcgatcaccttgctcagcagccat |
242 |
Q |
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| T |
26483968 |
caccacaaccccatttgaaccattcacttggtacactatttcatcatccaaaagtggtactgcaatggaggaacatccatcaccttgctcttcagccat |
26484066 |
T |
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