View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18277_high_1 (Length: 938)
Name: NF18277_high_1
Description: NF18277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18277_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 731; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 731; E-Value: 0
Query Start/End: Original strand, 18 - 795
Target Start/End: Complemental strand, 35230343 - 35229564
Alignment:
| Q |
18 |
acatggtgatgcaatgtttgggtgctatttgtggtgctggtgttgtgaaaggttttgaaggaaagacaagatttggagatctgaaaggtggtgccaactt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35230343 |
acatggtgatgcaatgtttgggtgctatttgtggtgctggtgttgtgaaaggttttgaaggaaagacaagatttggagatctgaaaggtggtgccaactt |
35230244 |
T |
|
| Q |
118 |
tgttgctcctggttacaccaaaggtgatggtcttggtgctgaaattgttggcactttcattcttgtttacaccgtcttctcagccaccgatgctaaacgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35230243 |
tgttgctcctggttacaccaaaggtgatggtcttggtgctgaaattgttggcactttcattcttgtttacaccgtcttctcagccaccgatgctaaacgt |
35230144 |
T |
|
| Q |
218 |
agcgctagagactctcatgttcccgtaagnnnnnnn-acattgtcaatcaatcataaccgtcgaattattataaacatttgactttaatcatatacactt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35230143 |
agcgctagagactctcatgttcccgtaagttttttttacgttgtcaatcaatcataaccgtcgaattattataaacatttgactttaatcatatacactt |
35230044 |
T |
|
| Q |
317 |
aataactatatagaaattaaaatcataacttattattatttgtgtgacttattttatgagtagattttggcaccattgccaattgggttcgctgtgttct |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35230043 |
aataactatatagaaattaaaatcataacttattattatttgtgtgacttattttatgagtagattttggcaccattgccaattgggttcgctgtgttct |
35229944 |
T |
|
| Q |
417 |
tggttcacttggccactatcccaattactggaactggtattaaccctgctcgtagtcttggtgctgctattatcttcaacaaggaccttggttgggatga |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35229943 |
tggttcacttggccactatcccaattactggaactggtattaaccctgctcgtagtcttggtgctgctattatcttcaacaaggaccttggttgggatga |
35229844 |
T |
|
| Q |
517 |
tcacgtaagttgaaaaattg-ttttgtaaaattatatatttgtttttctgaattttctatctcatttatcttgcgtgttcattaattattattattcttg |
615 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
35229843 |
tcacgtaagttgaaaaattgtttttgtaaaattatatatttgtttttctgaattttctatctcatttgtcttgtgtgttcattaattattattattcttg |
35229744 |
T |
|
| Q |
616 |
cagtggatcttctgggtgggaccatttattggagcagctcttgcagcactctaccacgtggttgtaatcagagccattcccttcaagtctaagtaatcga |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35229743 |
cagtggatcttctgggtgggaccatttattggagcagctcttgcagcactctaccacgtggttgtaatcagagccattcccttcaagtctaagtaatcga |
35229644 |
T |
|
| Q |
716 |
atcaaacggttcgtgatcaatcaagacatgtttgtgggcttcatttcatcatcatccttttctttttccttgttttcttc |
795 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35229643 |
atcaaacggttcgtgatcaatcaagacatgtttgtgggcttcatttcatcatcatccttttctttttccttgttttcttc |
35229564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 376 - 483
Target Start/End: Complemental strand, 2649318 - 2649211
Alignment:
| Q |
376 |
gtagattttggcaccattgccaattgggttcgctgtgttcttggttcacttggccactatcccaattactggaactggtattaaccctgctcgtagtctt |
475 |
Q |
| |
|
||||||||||||||| | ||||||||||| |||||||| |||||||||||||| || || || |||||||||||||| |||||||| ||| | |||||| |
|
|
| T |
2649318 |
gtagattttggcacctcttccaattgggtttgctgtgtttttggttcacttggctacaattcccattactggaactggcattaacccagctaggagtctt |
2649219 |
T |
|
| Q |
476 |
ggtgctgc |
483 |
Q |
| |
|
|||||||| |
|
|
| T |
2649218 |
ggtgctgc |
2649211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 124 - 210
Target Start/End: Complemental strand, 2649525 - 2649439
Alignment:
| Q |
124 |
tcctggttacaccaaaggtgatggtcttggtgctgaaattgttggcactttcattcttgtttacaccgtcttctcagccaccgatgc |
210 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| |||||||| ||||| ||||||| ||||| |||||||| ||||| ||||| |
|
|
| T |
2649525 |
tcctggttacaccaagggtgatggtcttggagctgagattgttggtacttttgttcttgtctacactgtcttctctgccactgatgc |
2649439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 883 - 923
Target Start/End: Complemental strand, 35229481 - 35229441
Alignment:
| Q |
883 |
tgagtaatggcctaattttcctatggttttgagttggaaat |
923 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35229481 |
tgagtaatggcctaattttcctatggttttgagttggaaat |
35229441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 9e-51; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 377 - 523
Target Start/End: Complemental strand, 31459643 - 31459497
Alignment:
| Q |
377 |
tagattttggcaccattgccaattgggttcgctgtgttcttggttcacttggccactatcccaattactggaactggtattaaccctgctcgtagtcttg |
476 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| || ||||| || ||||||||||||||||| |||||||||||||| ||||||||| | ||||||| |
|
|
| T |
31459643 |
tagattttggctccattgccaattgggttcgctgtatttttggtgcatttggccactatcccaatcactggaactggtatcaaccctgctaggagtcttg |
31459544 |
T |
|
| Q |
477 |
gtgctgctattatcttcaacaaggaccttggttgggatgatcacgta |
523 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31459543 |
gtgctgcaattatcttcaacaaagaccttggttgggatgatcacgta |
31459497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 104 - 244
Target Start/End: Complemental strand, 31459966 - 31459826
Alignment:
| Q |
104 |
ggtggtgccaactttgttgctcctggttacaccaaaggtgatggtcttggtgctgaaattgttggcactttcattcttgtttacaccgtcttctcagcca |
203 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||| || || ||||||| |||||||||||||| |||| |
|
|
| T |
31459966 |
ggtggtgctaactttgttgcccctggttacactaaaggtgatggacttggagctgagattgttggtacctttgttcttgtctacaccgtcttctccgcca |
31459867 |
T |
|
| Q |
204 |
ccgatgctaaacgtagcgctagagactctcatgttcccgta |
244 |
Q |
| |
|
| ||||| || |||||||| |||||||| || ||||||||| |
|
|
| T |
31459866 |
ctgatgccaagcgtagcgccagagactcccacgttcccgta |
31459826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 614 - 704
Target Start/End: Complemental strand, 31459392 - 31459302
Alignment:
| Q |
614 |
tgcagtggatcttctgggtgggaccatttattggagcagctcttgcagcactctaccacgtggttgtaatcagagccattcccttcaagtc |
704 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||| ||||| |||||||| || |||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
31459392 |
tgcagtggattttctgggttggaccattcattggtgcagcacttgcagctctttaccacacagttgtgatcagagccattcctttcaagtc |
31459302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 33880362 - 33880417
Alignment:
| Q |
254 |
acattgtcaatcaatcataaccgtcgaattattataaacatttgactttaatcata |
309 |
Q |
| |
|
||||||||||||||||||||| || |||||||| |||||||| ||| |||||||| |
|
|
| T |
33880362 |
acattgtcaatcaatcataactatcaaattattaaaaacattttactctaatcata |
33880417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 4e-22; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 378 - 516
Target Start/End: Complemental strand, 4481974 - 4481836
Alignment:
| Q |
378 |
agattttggcaccattgccaattgggttcgctgtgttcttggttcacttggccactatcccaattactggaactggtattaaccctgctcgtagtcttgg |
477 |
Q |
| |
|
|||||||||||||| |||||||||| || |||||||| ||||| || ||||| || || |||||||| || |||||||||||||| ||| | ||||| || |
|
|
| T |
4481974 |
agattttggcaccactgccaattggatttgctgtgtttttggtgcatttggctacaattccaattacagggactggtattaacccagctagaagtctagg |
4481875 |
T |
|
| Q |
478 |
tgctgctattatcttcaacaaggaccttggttgggatga |
516 |
Q |
| |
|
||||||| |||| | ||||||||||| | ||||||||| |
|
|
| T |
4481874 |
tgctgctcttatatacaacaaggaccaagcttgggatga |
4481836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 4482825 - 4482788
Alignment:
| Q |
26 |
atgcaatgtttgggtgctatttgtggtgctggtgttgt |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4482825 |
atgcaatgtttgggtgctatttgtggtgctgctgttgt |
4482788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 1132148 - 1132203
Alignment:
| Q |
254 |
acattgtcaatcaatcataaccgtcgaattattataaacatttgactttaatcata |
309 |
Q |
| |
|
|||| |||||||||||||||||||| || |||| |||||||||||||| |||||| |
|
|
| T |
1132148 |
acatcgtcaatcaatcataaccgtcagatcattagaaacatttgacttttatcata |
1132203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 462
Target Start/End: Original strand, 21794004 - 21794085
Alignment:
| Q |
381 |
ttttggcaccattgccaattgggttcgctgtgttcttggttcacttggccactatcccaattactggaactggtattaaccc |
462 |
Q |
| |
|
||||||||||| | || ||||| || ||||| ||| ||||||||||||| |||||||| |||| || || ||||||||||| |
|
|
| T |
21794004 |
ttttggcaccacttcccattggatttgctgttttcatggttcacttggctactatccccgttaccggcaccggtattaaccc |
21794085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 41037195 - 41037417
Alignment:
| Q |
18 |
acatggtgatgcaatgtttgggtgctatttgtggtgctggtgttgtgaaaggttttgaaggaaagacaagatttggagatctgaaaggtggtgccaactt |
117 |
Q |
| |
|
|||| |||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||| || | || | || | | ||||||||||| || || |
|
|
| T |
41037195 |
acattgtgatgcaatgtcttggtgctatttgtggtgctggtgtggtgaagggttttgaaggtaatgctaggtatgaactgtttaaaggtggtgctaattt |
41037294 |
T |
|
| Q |
118 |
tgttgctcctggttacaccaaaggtgatggtcttggtgctgaaattgttggcactttcattcttgtttacaccgtcttctcagccaccgatgctaaacgt |
217 |
Q |
| |
|
||| |||||| ||||| ||||||||||| ||||| ||||| |||||||| || || ||||||| ||||| || ||||| || || ||||| || | |
|
|
| T |
41037295 |
tgtgaatcctggatacactaaaggtgatggacttggagctgagattgttggtacctttgttcttgtctacactgttttctctgctactgatgccaagaga |
41037394 |
T |
|
| Q |
218 |
agcgctagagactctcatgttcc |
240 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
41037395 |
aatgctagagactctcatgttcc |
41037417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 398 - 516
Target Start/End: Original strand, 41037828 - 41037946
Alignment:
| Q |
398 |
attgggttcgctgtgttcttggttcacttggccactatcccaattactggaactggtattaaccctgctcgtagtcttggtgctgctattatcttcaaca |
497 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| || || ||||| || ||||| || |||||||| ||| | |||||||| ||||| |||||||| |||| |
|
|
| T |
41037828 |
attgggtttgctgtgttcttggtccacttggctacaattccaatcacaggaacgggcattaacccagctaggagtcttggagctgccattatctttaaca |
41037927 |
T |
|
| Q |
498 |
aggaccttggttgggatga |
516 |
Q |
| |
|
|||| ||| ||||||||| |
|
|
| T |
41037928 |
gggactttgcttgggatga |
41037946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 613 - 659
Target Start/End: Original strand, 41038053 - 41038099
Alignment:
| Q |
613 |
ttgcagtggatcttctgggtgggaccatttattggagcagctcttgc |
659 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |||||||| |
|
|
| T |
41038053 |
ttgcagtggatattctgggttggaccatttattggagctgctcttgc |
41038099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 381 - 466
Target Start/End: Complemental strand, 40834990 - 40834905
Alignment:
| Q |
381 |
ttttggcaccattgccaattgggttcgctgtgttcttggttcacttggccactatcccaattactggaactggtattaaccctgct |
466 |
Q |
| |
|
||||||||||| | ||||||||||| || ||||| |||||||| | || ||||| || || |||||||||||||||||||||||| |
|
|
| T |
40834990 |
ttttggcaccacttccaattgggtttgcagtgtttatggttcaccttgctactattcctatcactggaactggtattaaccctgct |
40834905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 7952301 - 7952356
Alignment:
| Q |
254 |
acattgtcaatcaatcataaccgtcgaattattataaacatttgactttaatcata |
309 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| |||||||| ||||| |||||| |
|
|
| T |
7952301 |
acattgtcaatcaatcataaccgtcggatcattaaaaacatttcacttttatcata |
7952356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 498
Target Start/End: Original strand, 42798098 - 42798215
Alignment:
| Q |
381 |
ttttggcaccattgccaattgggttcgctgtgttcttggttcacttggccactatcccaattactggaactggtattaaccctgctcgtagtcttggtgc |
480 |
Q |
| |
|
||||||||||| | || ||||| || ||||| ||| ||||||| ||||| || |||||| | ||||| ||||| || || |||||| | ||||||||| | |
|
|
| T |
42798098 |
ttttggcaccacttcccattggctttgctgtattcatggttcatttggcaaccatcccagtcactggcactggcatcaatcctgctagaagtcttggttc |
42798197 |
T |
|
| Q |
481 |
tgctattatcttcaacaa |
498 |
Q |
| |
|
|||| |||||| |||||| |
|
|
| T |
42798198 |
tgctgttatctacaacaa |
42798215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University