View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18277_high_13 (Length: 335)
Name: NF18277_high_13
Description: NF18277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18277_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 2 - 198
Target Start/End: Complemental strand, 26543126 - 26542947
Alignment:
| Q |
2 |
ttcttctccgaagcatgatgatgggtctgaaatttattttggcatgtctcgttcggttgcactaaaagtggtgtttggtatgttaatggctttggttgca |
101 |
Q |
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| T |
26543126 |
ttcttctccgaagcatgatgatcggtctgaaatttattttggcatgtctcattcggttgcactaaaagtggtgtttggtatgttaatggctttggttgca |
26543027 |
T |
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| Q |
102 |
gtgttggcacnnnnnnnatggatcactcgtggtaatgctcgatcttctacaatgtcctctacacagcttcaatcacaaagtgat--tactcatgtttag |
198 |
Q |
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| T |
26543026 |
gtgttggcac-------------------tggtaatgctcgatcttctacaatgtccgctacgcagcttcaatcacaaagtgatgctactcatgtttag |
26542947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 227 - 324
Target Start/End: Complemental strand, 26542917 - 26542820
Alignment:
| Q |
227 |
cattgtagtataagaagacactgtcatattattatatgannnnnnnnaggggatttggtgctatgtatgttcatctttgtttgatgattttaagtatt |
324 |
Q |
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| T |
26542917 |
cattgtagtataagaagacactgtcatattattatatgattttttttaggggatttggtgctatgtatgttcatctttgtttgatgattttaagtatt |
26542820 |
T |
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