View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18277_high_3 (Length: 751)

Name: NF18277_high_3
Description: NF18277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18277_high_3
NF18277_high_3
[»] chr7 (30 HSPs)
chr7 (18-739)||(36221014-36221739)
chr7 (20-739)||(36217021-36217746)
chr7 (184-632)||(36225994-36226446)
chr7 (241-626)||(35982180-35982561)
chr7 (241-626)||(36003592-36003973)
chr7 (313-635)||(35973546-35973868)
chr7 (313-635)||(35994958-35995280)
chr7 (159-362)||(35939415-35939622)
chr7 (503-714)||(35958415-35958634)
chr7 (207-377)||(35958123-35958295)
chr7 (500-714)||(35977867-35978089)
chr7 (500-714)||(35999279-35999501)
chr7 (245-314)||(35965669-35965738)
chr7 (207-371)||(35946918-35947084)
chr7 (18-154)||(32727506-32727642)
chr7 (500-632)||(35947207-35947339)
chr7 (207-319)||(35977578-35977690)
chr7 (207-319)||(35998990-35999102)
chr7 (192-315)||(29602862-29602987)
chr7 (217-317)||(35955182-35955282)
chr7 (244-315)||(29750307-29750378)
chr7 (38-91)||(35981964-35982017)
chr7 (38-91)||(36003376-36003429)
chr7 (38-91)||(35946735-35946788)
chr7 (664-736)||(35973905-35973977)
chr7 (664-736)||(35995317-35995389)
chr7 (244-315)||(29743270-29743341)
chr7 (664-714)||(35926323-35926373)
chr7 (38-91)||(35977398-35977451)
chr7 (38-91)||(35998810-35998863)
[»] chr1 (5 HSPs)
chr1 (207-420)||(18125831-18126046)
chr1 (160-287)||(18118138-18118267)
chr1 (38-114)||(18118010-18118086)
chr1 (664-710)||(18126298-18126344)
chr1 (479-608)||(18126105-18126234)
[»] chr2 (1 HSPs)
chr2 (18-114)||(26328685-26328781)


Alignment Details
Target: chr7 (Bit Score: 647; Significance: 0; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 647; E-Value: 0
Query Start/End: Original strand, 18 - 739
Target Start/End: Complemental strand, 36221739 - 36221014
Alignment:
Q  18 atatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatcaaaatggttaatgtcttcttggttag 117  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36221739 atatcatctaggatgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatcaaaatggttaatgtcttcttggttag 36221640  T
Q  118 ccatagcaacacttggtggagttgatgctgaagcaaaagctgagttgataattttgataataatgcgcctaatatcaaaatcattggagacacat--cca 215  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  36221639 ccatagcaacacttggtggagttgatgctgaagcaaaagcagagttgataattttgataataatgcgcctaatatcaaaatcattggagacacacaccca 36221540  T
Q  216 aatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataaca 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36221539 aatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataaca 36221440  T
Q  316 ca--aatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataacacttgaag 413  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36221439 cacaaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttcttccctgtcattctccctcccaataacacttgaag 36221340  T
Q  414 catcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccacctt 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36221339 catcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcacaagtccaaaccttgtcccgtcagctgccacctt 36221240  T
Q  514 attcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagtg 613  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36221239 attcaatctatctctaatctctttgattttatgtgacatcctaaaacggaaagctagtggatttgaggaagaaaacaagtggcataccttcattcgagtg 36221140  T
Q  614 ctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatccatcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgc 713  Q
    ||||||||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36221139 ctgccagaagctttcacaattttattttttcttgtcttgcaactcaaatccatcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgc 36221040  T
Q  714 agagcatgttgttggttcttcttctc 739  Q
    ||||||||||||||||||||||||||    
T  36221039 agagcatgttgttggttcttcttctc 36221014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 739
Target Start/End: Complemental strand, 36217746 - 36217021
Alignment:
Q  20 atcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatcaaaatggttaatgtcttcttggttagcc 119  Q
    ||||||||| ||||||||||||||||| ||||| |||||| |||||||| ||||||||||||||||||| ||| | |||||| | |||||||||  |||     
T  36217746 atcatctagcacgaggataaacttttggccagatagtttacgtcttagatgaatttgtagttgctcaatgtcacagtggttactatcttcttggggagca 36217647  T
Q  120 atagcaacacttggtggagttgatgctgaagcaaaagctgagttgataattttgataataatgcgcctaatatcaaaatcattggagacacat--ccaaa 217  Q
    |||| ||||||||||| ||      ||||||||||| | |||||||||||||||||||  ||  | || ||||||||||||   |||||||||  ||| |    
T  36217646 ataggaacacttggtgcag------ctgaagcaaaaacggagttgataattttgataacgatctgtcttatatcaaaatcaacagagacacatgcccaca 36217553  T
Q  218 tcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacaca 317  Q
    |||||||||| ||||  ||||||||||||||||||||| |||||||  |||||||||||||||||||||| || |||||||| |||||||||||||||||    
T  36217552 tcttcaattgaaaaacttcatctatcctcttatcattgtacaccaattttgcaagtgtggtcttccccaatcctccaattcccactatgggaataacaca 36217453  T
Q  318 --aatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataacacttgaagca 415  Q
      || || | | ||||| |||||  || |||||||  |  | ||||||||| | ||||||| ||||| | ||||||||||| || |||||||||||| ||    
T  36217452 taaacttctatgaccatttccataaccttgaggatcggaatccatcaaaagctcgataattgcttccttgtcattctcccttcctataacacttgaaaca 36217353  T
Q  416 tcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccaccttat 515  Q
    ||||  |  ||||  |||| ||||||  | ||||||  | |  | ||  ||||||  |||||| ||||||||||| | ||||| ||||||||||| ||||    
T  36217352 tcaatatgggaataggtgatttctctattgtgcacagaaagtccgggctcaacatgaattctcacaagtccaaacttggtcccatcagctgccactttat 36217253  T
Q  516 tcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagtgct 615  Q
     |||||||| ||||||||||||||||| | ||||||||||||||||||||||  | ||||| ||||||||||| ||||||||||||||||  || |||||    
T  36217252 ccaatctatctctaatctctttgatttgacgtgacatcctaaaacggaaagcaagcggattagaggaagaaaagaagtggcataccttcaaccgtgtgct 36217153  T
Q  616 gccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgttttgtacctgcctcaacca 706  Q
     ||||||||||  ||||||||       | ||||||||||||||||||         |||||||||||||||||||||||||||| | |||||| |||||    
T  36217152 tccagaagcttcaacaaattgctttctcc-tgtcttgcaactcaaatccatccaatacatcttcagcatcatagcagatgttttgaatctgccttaacca 36217054  T
Q  707 ttcacgcagagcatgttgttggttcttcttctc 739  Q
    ||||| ||  ||||||||  |||||||||||||    
T  36217053 ttcacacaaggcatgttgccggttcttcttctc 36217021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 184 - 632
Target Start/End: Original strand, 36225994 - 36226446
Alignment:
Q  184 gcctaatatcaaaatcattggaga--cacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtctt 281  Q
    ||||||||||||||||||  ||||  |||| ||| |||||||||||||||| |||||| | ||||||||| |||||||||||  ||||||||||||||||    
T  36225994 gcctaatatcaaaatcatcagagatacacacccacatcttcaattggaaaagatcatcaaccctcttatcgttgaacaccaattttgcaagtgtggtctt 36226093  T
Q  282 ccccaagccaccaattccaactatgggaata--acacaaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttct 379  Q
    |||||||||||||||||| ||||||||||||  ||||||| |||| ||||||||  |||| || |||||||| || ||||||||||| |||||||| ||     
T  36226094 ccccaagccaccaattcccactatgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataatatca 36226193  T
Q  380 tccctatcattctccctcccaataacacttgaagcatcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcg 479  Q
    | ||| ||||||||||| || || |||  ||||||||||||||  |||||||| | ||||||| |||||||| || |  |     |||||   |||   |    
T  36226194 ttcctctcattctcccttcctatcacatctgaagcatcaacgtgggaatgagtcatttctctcttctgcacagcaagtcctaaatcaacactaattgctg 36226293  T
Q  480 caagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttga 579  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||  |||||||||||||||  |  || |||| |||||||||||||  ||||| | ||    
T  36226294 caagtccaaacctagtcccatcagctgccaccttattcaatctatccctaatctctttgattcgacatgccatcttaaaacggaaagcaagtggactaga 36226393  T
Q  580 ggaagaaaacaagtggcataccttcattcgagtgctgccagaagctttcacaa 632  Q
    ||||||||| || |||| ||||||||| | ||||||||  ||||||| |||||    
T  36226394 ggaagaaaaaaattggcgtaccttcatcctagtgctgcatgaagcttccacaa 36226446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 241 - 626
Target Start/End: Original strand, 35982180 - 35982561
Alignment:
Q  241 atcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacacaaatttttgtcaccatctccatct 340  Q
    ||||||| ||||||||| |||||  |||||||||| ||||| ||||| || |||||||| || |||||||||||||| |   || |    ||| |||||     
T  35982180 atcctctcatcattgaaaaccaattttgcaagtgtagtctttcccaaacctccaattcccacaatgggaataacacataagctttt----atcaccatca 35982275  T
Q  341 ccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataacacttgaagcatcaacgtatgaatgagtgaattctc 440  Q
    || |||||||| ||| |||||||||| ||||||||||| |||||||| ||||| || || || |||    |||||||||| |  |||||||| |||||||    
T  35982276 ccttgaggatgtggtagcatcaaaagcttgataatttcatccctatccttctctcttcctatcacatccaaagcatcaacatgggaatgagtcaattctc 35982375  T
Q  441 tcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgat 540  Q
    |  | ||||||| | |  ||||  ||||||| ||||||  |||||||||| | ||||| ||||||||||||||||  |||||||| ||||| ||||||||    
T  35982376 ttttttgcacaatatgtccaggatcaacatcaattctcataagtccaaacttagtcccatcagctgccaccttatctaatctattcctaatttctttgat 35982475  T
Q  541 tttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctt 626  Q
    |  ||||| |||||||| ||| |||||  ||||||| ||||||||||| ||||||| ||||||| | |||||||||||||||||||    
T  35982476 tcgatgtgccatcctaagacgaaaagcaagtggattagaggaagaaaagaagtggcgtaccttcgtccgagtgctgccagaagctt 35982561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 241 - 626
Target Start/End: Original strand, 36003592 - 36003973
Alignment:
Q  241 atcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacacaaatttttgtcaccatctccatct 340  Q
    ||||||| ||||||||| |||||  |||||||||| ||||| ||||| || |||||||| || |||||||||||||| |   || |    ||| |||||     
T  36003592 atcctctcatcattgaaaaccaattttgcaagtgtagtctttcccaaacctccaattcccacaatgggaataacacataagctttt----atcaccatca 36003687  T
Q  341 ccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataacacttgaagcatcaacgtatgaatgagtgaattctc 440  Q
    || |||||||| ||| |||||||||| ||||||||||| |||||||| ||||| || || || |||    |||||||||| |  |||||||| |||||||    
T  36003688 ccttgaggatgtggtagcatcaaaagcttgataatttcatccctatccttctctcttcctatcacatccaaagcatcaacatgggaatgagtcaattctc 36003787  T
Q  441 tcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgat 540  Q
    |  | ||||||| | |  ||||  ||||||| ||||||  |||||||||| | ||||| ||||||||||||||||  |||||||| ||||| ||||||||    
T  36003788 ttttttgcacaatatgtccaggatcaacatcaattctcataagtccaaacttagtcccatcagctgccaccttatctaatctattcctaatttctttgat 36003887  T
Q  541 tttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctt 626  Q
    |  ||||| |||||||| ||| |||||  ||||||| ||||||||||| ||||||| ||||||| | |||||||||||||||||||    
T  36003888 tcgatgtgccatcctaagacgaaaagcaagtggattagaggaagaaaagaagtggcgtaccttcgtccgagtgctgccagaagctt 36003973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 313 - 635
Target Start/End: Original strand, 35973546 - 35973868
Alignment:
Q  313 acacaaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataacacttgaa 412  Q
    ||||||| |||| ||||| |||||||| || |||||| | |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35973546 acacaaacttttatcaccgtctccatcaccttgaggacgtggttgcatcagaagcttgataatttcttccctatcattctccctcccaataacacttgaa 35973645  T
Q  413 gcatcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccacct 512  Q
    ||||| || |  |||| ||| ||||||||||| |||| |||| | |||||  ||   |||||| ||||||| |||||| |  |||| || ||||| ||||    
T  35973646 gcatcgacatgggaattagtcaattctctcctatgcaaaacaagttcaggaccattgtcgattttcgcaagaccaaacttgttcccatcggctgctacct 35973745  T
Q  513 tattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagt 612  Q
    ||| ||| ||||  | |||  ||||||| | |||   ||| ||| |||||||| |  ||||||| ||||| ||||| |||| || ||||||||| |  ||    
T  35973746 tatccaacctatcccgaatgcctttgatctgatggtccattctagaacggaaaacaagtggattggaggaggaaaagaagtagcttaccttcatgctcgt 35973845  T
Q  613 gctgccagaagctttcacaaatt 635  Q
    |||||||||||| | ||||||||    
T  35973846 gctgccagaagcatccacaaatt 35973868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 313 - 635
Target Start/End: Original strand, 35994958 - 35995280
Alignment:
Q  313 acacaaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataacacttgaa 412  Q
    ||||||| |||| ||||| |||||||| || |||||| | |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35994958 acacaaacttttatcaccgtctccatcaccttgaggacgtggttgcatcagaagcttgataatttcttccctatcattctccctcccaataacacttgaa 35995057  T
Q  413 gcatcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccacct 512  Q
    ||||| || |  |||| ||| ||||||||||| |||| |||| | |||||  ||   |||||| ||||||| |||||| |  |||| || ||||| ||||    
T  35995058 gcatcgacatgggaattagtcaattctctcctatgcaaaacaagttcaggaccattgtcgattttcgcaagaccaaacttgttcccatcggctgctacct 35995157  T
Q  513 tattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagt 612  Q
    ||| ||| ||||  | |||  ||||||| | |||   ||| ||| |||||||| |  ||||||| ||||| ||||| |||| || ||||||||| |  ||    
T  35995158 tatccaacctatcccgaatgcctttgatctgatggtccattctagaacggaaaacaagtggattggaggaggaaaagaagtagcttaccttcatgctcgt 35995257  T
Q  613 gctgccagaagctttcacaaatt 635  Q
    |||||||||||| | ||||||||    
T  35995258 gctgccagaagcatccacaaatt 35995280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 159 - 362
Target Start/End: Original strand, 35939415 - 35939622
Alignment:
Q  159 gagttgataattttgataataatgcgcctaatatcaaaatcattggagacacat--ccaaatcttcaattggaaaatatcatctatcctcttatcattga 256  Q
    |||||||| ||||| ||||| ||  |||| |||||||| ||||||||||||||   ||| ||||||||||||||||  | ||  | ||||||||||||||    
T  35939415 gagttgattattttaataattatctgcctgatatcaaactcattggagacacacaaccacatcttcaattggaaaagttgattcaccctcttatcattga 35939514  T
Q  257 acaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacac--aaatttttgtcaccatctccatctccatgaggatgcgg 354  Q
    |||||||| ||||||||||||||||||| || || |||||||| || |||||||||||||  ||| |||| |||||||| ||||| || |||||||| ||    
T  35939515 acaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatcaccatcaccgtgaggatgtgg 35939614  T
Q  355 ttgcatca 362  Q
    ||||||||    
T  35939615 ttgcatca 35939622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 503 - 714
Target Start/End: Original strand, 35958415 - 35958634
Alignment:
Q  503 gctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcatacct 602  Q
    ||||||||||||| ||||||||  ||||||||||||||||  || | |||  |||||||||||||  ||| ||| ||||||||||||||||||| |||||    
T  35958415 gctgccaccttatccaatctatccctaatctctttgatttggtgcgccattttaaaacggaaagcaagtgaattagaggaagaaaacaagtggcgtacct 35958514  T
Q  603 tcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgttttgta 693  Q
    |||  || ||||| |||||||||| ||||| |||       |||||||||||| |||||||         ||||||||||||||||||| || ||||| |    
T  35958515 tcacccgtgtgcttccagaagcttccacaacttg-ttttcgcttgtcttgcaagtcaaatccatccaatacatcttcagcatcatagcatatattttgaa 35958613  T
Q  694 cctgcctcaaccattcacgca 714  Q
     |||||||| |||||||||||    
T  35958614 tctgcctcagccattcacgca 35958634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 207 - 377
Target Start/End: Original strand, 35958123 - 35958295
Alignment:
Q  207 acacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatg 306  Q
    ||||| ||| |||||||| |||||||  | ||| ||||||||||||||||||||| || |||||||||| ||||| ||||| || |||||||| |||||     
T  35958123 acacacccacatcttcaactggaaaagttgatccatcctcttatcattgaacaccgactttgcaagtgttgtctttcccaaacctccaattcccactatt 35958222  T
Q  307 ggaataacac--aaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataattt 377  Q
    ||||| ||||  | | | || |||||||| ||||||||  ||||||| || ||||||||||| ||||||||||    
T  35958223 ggaatgacacagagactattatcaccatcaccatctccgcgaggatgtggctgcatcaaaagattgataattt 35958295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 500 - 714
Target Start/End: Original strand, 35977867 - 35978089
Alignment:
Q  500 tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata 599  Q
    |||||||||||||||| || |||||  |||||||||||||||| | ||| |||||||||||||||| |  ||||||| ||||||||||| ||||||| ||    
T  35977867 tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgta 35977966  T
Q  600 ccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgtttt 690  Q
    ||||||  ||  |||| | |||||||||||||| |||       |||||||||||| | |||||         ||||||||||||||||||| || ||||    
T  35977967 ccttcacccgtctgcttcgagaagctttcacaacttg-ctttcgcttgtcttgcaagttaaatccatccaatacatcttcagcatcatagcatatatttt 35978065  T
Q  691 gtacctgcctcaaccattcacgca 714  Q
    | | |||||||| |||||||||||    
T  35978066 gaatctgcctcagccattcacgca 35978089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 500 - 714
Target Start/End: Original strand, 35999279 - 35999501
Alignment:
Q  500 tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata 599  Q
    |||||||||||||||| || |||||  |||||||||||||||| | ||| |||||||||||||||| |  ||||||| ||||||||||| ||||||| ||    
T  35999279 tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgta 35999378  T
Q  600 ccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatc---------catcttcagcatcatagcagatgtttt 690  Q
    ||||||  ||  |||| | |||||||||||||| |||       |||||||||||| | |||||         ||||||||||||||||||| || ||||    
T  35999379 ccttcacccgtctgcttcgagaagctttcacaacttg-ctttcgcttgtcttgcaagttaaatccatccaatacatcttcagcatcatagcatatatttt 35999477  T
Q  691 gtacctgcctcaaccattcacgca 714  Q
    | | |||||||| |||||||||||    
T  35999478 gaatctgcctcagccattcacgca 35999501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 245 - 314
Target Start/End: Original strand, 35965669 - 35965738
Alignment:
Q  245 tcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataac 314  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||| | ||||||||||||    
T  35965669 tcttatcattgaacaccaagtttgcaagtgtggtcttccccaagccaccaattcctagtatgggaataac 35965738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 207 - 371
Target Start/End: Original strand, 35946918 - 35947084
Alignment:
Q  207 acacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatg 306  Q
    ||||| ||| |||||||| |||||||  | || |||||||||||||||||||||| || | |||||||||||||||| ||| || |||||||| |||||     
T  35946918 acacacccacatcttcaactggaaaagttgatgtatcctcttatcattgaacaccgacttcgcaagtgtggtcttccacaaacctccaattcccactatt 35947017  T
Q  307 ggaataacac--aaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttga 371  Q
    ||||| ||||  | | | || |||||||| ||||| || |||||||| || ||||||||||| ||||    
T  35947018 ggaatgacacagagactattatcaccatcaccatcgccgtgaggatgtggctgcatcaaaagattga 35947084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 32727506 - 32727642
Alignment:
Q  18 atatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatcaaaatggttaatgtcttcttggttag 117  Q
    ||||| |||||||| || | |||||| ||||||| |||||||||||||  |||| ||||||| |||||||||||||| | ||| |||| |||||||| ||    
T  32727506 atatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactttgtagctgctcaatatcaaagttgttgatgttttcttggtgag 32727605  T
Q  118 ccatagcaacacttggtggagttgatgctgaagcaaa 154  Q
    | | || |||||||||||||  ||| |||| ||||||    
T  32727606 caagagaaacacttggtggaactgaagctggagcaaa 32727642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 500 - 632
Target Start/End: Original strand, 35947207 - 35947339
Alignment:
Q  500 tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata 599  Q
    |||||||||||||||| || |||||  |||||||||||||||| | ||| |||||||||||| ||| |  ||||||| ||||||||||| ||||||  ||    
T  35947207 tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacgaaaaacaagtggattagaggaagaaaagaagtggacta 35947306  T
Q  600 ccttcattcgagtgctgccagaagctttcacaa 632  Q
     |||||  || ||||| | ||||||||||||||    
T  35947307 acttcacccgtgtgcttcgagaagctttcacaa 35947339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 207 - 319
Target Start/End: Original strand, 35977578 - 35977690
Alignment:
Q  207 acacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatg 306  Q
    ||||| ||| |||||||| |||||||  | ||| ||||||||||||||||||||| || ||||||  |||||||||||||| || |||||||| |||||     
T  35977578 acacacccacatcttcaactggaaaagttgatccatcctcttatcattgaacaccgactttgcaatggtggtcttccccaaacctccaattcccactatt 35977677  T
Q  307 ggaataacacaaa 319  Q
    ||||| |||||||    
T  35977678 ggaatgacacaaa 35977690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 207 - 319
Target Start/End: Original strand, 35998990 - 35999102
Alignment:
Q  207 acacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatg 306  Q
    ||||| ||| |||||||| |||||||  | ||| ||||||||||||||||||||| || ||||||  |||||||||||||| || |||||||| |||||     
T  35998990 acacacccacatcttcaactggaaaagttgatccatcctcttatcattgaacaccgactttgcaatggtggtcttccccaaacctccaattcccactatt 35999089  T
Q  307 ggaataacacaaa 319  Q
    ||||| |||||||    
T  35999090 ggaatgacacaaa 35999102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 192 - 315
Target Start/End: Original strand, 29602862 - 29602987
Alignment:
Q  192 tcaaaatcattggagacacat--ccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagc 289  Q
    |||||||||| |||||||||   ||| ||||| ||| ||||| | || ||||  ||||||||||||||||||  | |||||||||| ||||| |||||||    
T  29602862 tcaaaatcatcggagacacacacccacatctttaatgggaaagtctcgtctaaactcttatcattgaacaccgtctttgcaagtgtagtctttcccaagc 29602961  T
Q  290 caccaattccaactatgggaataaca 315  Q
    | ||||||||||| || |||||||||    
T  29602962 ctccaattccaacaataggaataaca 29602987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 217 - 317
Target Start/End: Original strand, 35955182 - 35955282
Alignment:
Q  217 atcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacac 316  Q
    |||||||||| |||||| | ||| | ||| | |||||||||||| ||| |||||||||||||||| ||||| || ||||| || | ||||||||||||||    
T  35955182 atcttcaatttgaaaatttgatccaccctttcatcattgaacactaactttgcaagtgtggtctttcccaatcctccaatacctattatgggaataacac 35955281  T
Q  317 a 317  Q
    |    
T  35955282 a 35955282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 244 - 315
Target Start/End: Complemental strand, 29750378 - 29750307
Alignment:
Q  244 ctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataaca 315  Q
    ||||||||||||||||||  | |||||||||| ||||| |||||||| ||||||||||| || |||||||||    
T  29750378 ctcttatcattgaacaccgtctttgcaagtgtagtctttcccaagcctccaattccaacaataggaataaca 29750307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 35981964 - 35982017
Alignment:
Q  38 aaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatc 91  Q
    ||||||||| |  ||||||||||||||||||||| |||||||||||||||||||    
T  35981964 aaacttttgtctggaaagtttatgtcttagacgagtttgtagttgctcaatatc 35982017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 36003376 - 36003429
Alignment:
Q  38 aaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatc 91  Q
    ||||||||| |  ||||||||||||||||||||| |||||||||||||||||||    
T  36003376 aaacttttgtctggaaagtttatgtcttagacgagtttgtagttgctcaatatc 36003429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 35946735 - 35946788
Alignment:
Q  38 aaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatc 91  Q
    ||||||||||||||||||||| |||||||||||| ||  ||||||| |||||||    
T  35946735 aaacttttgaccagaaagtttttgtcttagacgacttactagttgcacaatatc 35946788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 664 - 736
Target Start/End: Original strand, 35973905 - 35973977
Alignment:
Q  664 catcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttctt 736  Q
    |||||||||||||  ||||||||||||| | |||||||| ||||||||||||  |||| | ||||| ||||||    
T  35973905 catcttcagcatcggagcagatgttttgaatctgcctcagccattcacgcagcccatgcttttggtccttctt 35973977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 664 - 736
Target Start/End: Original strand, 35995317 - 35995389
Alignment:
Q  664 catcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttctt 736  Q
    |||||||||||||  ||||||||||||| | |||||||| ||||||||||||  |||| | ||||| ||||||    
T  35995317 catcttcagcatcggagcagatgttttgaatctgcctcagccattcacgcagcccatgcttttggtccttctt 35995389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 315
Target Start/End: Complemental strand, 29743341 - 29743270
Alignment:
Q  244 ctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataaca 315  Q
    |||||||||||||||||   | ||||||| || ||||| |||||||| ||||||||||| || |||||||||    
T  29743341 ctcttatcattgaacactgtctttgcaagcgtagtctttcccaagcctccaattccaacaataggaataaca 29743270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 664 - 714
Target Start/End: Original strand, 35926323 - 35926373
Alignment:
Q  664 catcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgca 714  Q
    ||||||||||||||||||| || ||||| | |||||||| |||||||||||    
T  35926323 catcttcagcatcatagcatatattttgaatctgcctcagccattcacgca 35926373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 35977398 - 35977451
Alignment:
Q  38 aaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatc 91  Q
    ||||||||||||||||||||| ||||| |||||| ||  ||||||| |||||||    
T  35977398 aaacttttgaccagaaagtttttgtctgagacgacttactagttgcacaatatc 35977451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 35998810 - 35998863
Alignment:
Q  38 aaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatc 91  Q
    ||||||||||||||||||||| ||||| |||||| ||  ||||||| |||||||    
T  35998810 aaacttttgaccagaaagtttttgtctgagacgacttactagttgcacaatatc 35998863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 207 - 420
Target Start/End: Original strand, 18125831 - 18126046
Alignment:
Q  207 acacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatg 306  Q
    ||||| ||| ||||||||||| || |  |||||||| |||||||||||||| || | | |||| | ||||||||||||||||||||||||||| || |||    
T  18125831 acacacccacatcttcaattgaaagagttcatctattctcttatcattgaaaacaagctttgccaatgtggtcttccccaagccaccaattcccaccatg 18125930  T
Q  307 ggaataacacaaat--ttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataa 404  Q
    ||||||||| | |   |||| |||||||| ||||| ||||||||||| | |||||||||||| |||||||| |||||||||||| |||| || || || |    
T  18125931 ggaataacagatagacttttatcaccatcaccatcaccatgaggatgtgcttgcatcaaaagcttgataatctcttccctatcactctctcttcctatta 18126030  T
Q  405 cacttgaagcatcaac 420  Q
    ||||  ||||||||||    
T  18126031 cactcaaagcatcaac 18126046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 160 - 287
Target Start/End: Original strand, 18118138 - 18118267
Alignment:
Q  160 agttgataattttgataataatgcgcctaatatcaaaatcattggagacacatcc--aaatcttcaattggaaaatatcatctatcctcttatcattgaa 257  Q
    ||||||| ||||||||||| ||| || |||||| ||||| ||||||||||||  |  | ||||||||||| ||||  ||||| ||||||||||| |||||    
T  18118138 agttgattattttgataattatgtgcataatataaaaataattggagacacagactcacatcttcaattgaaaaaattcatcgatcctcttatcgttgaa 18118237  T
Q  258 caccaaccttgcaagtgtggtcttccccaa 287  Q
     |||||| ||||||||||||||||||||||    
T  18118238 taccaactttgcaagtgtggtcttccccaa 18118267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 18118010 - 18118086
Alignment:
Q  38 aaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatcaaaatggttaatgtcttcttggt 114  Q
    |||| ||| |||| |||||||| |||| |||||| ||||||| |||||||||||||||||||| |||| ||||||||    
T  18118010 aaaccttttaccataaagtttacgtctcagacgactttgtagctgctcaatatcaaaatggtttatgttttcttggt 18118086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 664 - 710
Target Start/End: Original strand, 18126298 - 18126344
Alignment:
Q  664 catcttcagcatcatagcagatgttttgtacctgcctcaaccattca 710  Q
    |||||||||||||||||||||| ||||||| |||||||  |||||||    
T  18126298 catcttcagcatcatagcagatattttgtatctgcctccgccattca 18126344  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 479 - 608
Target Start/End: Original strand, 18126105 - 18126234
Alignment:
Q  479 gcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttg 578  Q
    |||||||||||| | ||||| || | ||| ||||||| ||||||||  ||||| ||||| ||||  | || |||||||| ||| |||||  ||| ||| |    
T  18126105 gcaagtccaaacttagtcccatcggttgctaccttatccaatctatccctaatatctttaatttgttttgccatcctaagacgaaaagcaagtgaattgg 18126204  T
Q  579 aggaagaaaacaagtggcataccttcattc 608  Q
    ||||| | || ||||||| |||||||||||    
T  18126205 aggaacagaagaagtggcgtaccttcattc 18126234  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 26328781 - 26328685
Alignment:
Q  18 atatcatctaggacgaggataaacttttgaccagaaagtttatgtcttagacgaatttgtagttgctcaatatcaaaatggttaatgtcttcttggt 114  Q
    |||||||||| |||||| | |||||||| ||| ||||| |||||||| |||||| |   || ||||||||||||||| || | ||||| ||||||||    
T  26328781 atatcatctaagacgagtacaaactttttacctgaaagcttatgtctaagacgactcactaattgctcaatatcaaagtgttcaatgttttcttggt 26328685  T

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